View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11120_high_1 (Length: 455)
Name: NF11120_high_1
Description: NF11120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11120_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 428; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 1 - 440
Target Start/End: Original strand, 52811177 - 52811616
Alignment:
| Q |
1 |
tgaaagattgtgcaggttaagtatcgaccccaataagagtcactgagaaatgctccaaccaatgagaacatgaaaacggttcctgtccacttgctcacat |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
52811177 |
tgaaagattgtgcaggttaagtatcgaccccaataagagtcactgagaaatgctccaaccaatgagaacatgtaaacggttcctgtccacttgctcacat |
52811276 |
T |
|
| Q |
101 |
tattagcagcttcggcattgtcttgaccaagaactctagttaggaatagaaccaagttcactccaactccgaagaaagctaaagtagccagtgcttgatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
52811277 |
tattagcagcttcggcattgtcttgaccaagaactctagttaggaacagaaccaagttcactccaactccaaagaaagctaaagtagccagtgcttgatt |
52811376 |
T |
|
| Q |
201 |
cactgcattgttcattcttcaaaaactcaaataaaagtaacaaataaaaagagtttgcaatcattttagtagtagtaagtacctaacaagagggttgcaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52811377 |
cactgcattgttcattcttcaaaaactcaaataaaagtaacaaataaaaagagtttgcaatcattttagtagtagtaagtacctaacaagagggttgcaa |
52811476 |
T |
|
| Q |
301 |
ctttggttcctccttttttattctcattcgctctgccactttcttccataacaacctcttctctgtaattctcatttccttccattttacctacctattt |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52811477 |
ctttggttcctccttttttattctcattcgctctgccactttcttccataacaacctcttctctgtaattctcatttccttccattttacctacctattt |
52811576 |
T |
|
| Q |
401 |
gtttataaagcaaatctatattatttactacatgcatact |
440 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
52811577 |
gtttataaagcaaatctatattatttactacatgcatact |
52811616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 77; Significance: 1e-35; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 396156 - 395948
Alignment:
| Q |
1 |
tgaaagattgtgcaggttaagtatcgaccccaataagagtcactgagaaatgctccaaccaatgagaacatgaaaacggttcctgtccacttgctcacat |
100 |
Q |
| |
|
|||||||| | ||| |||||||||| ||||||||||| ||||| || |||||||| | | ||| || ||| |||| ||||| |||||| ||| |||| |
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| T |
396156 |
tgaaagatagcgcatgttaagtatcttccccaataagaatcactaaggaatgctcccaagagtgaaaatatgtaaacagttccagtccacaagctgacat |
396057 |
T |
|
| Q |
101 |
tattagcagcttcggcattgtcttgaccaagaactctagttaggaatagaaccaagttcactccaactccgaagaaagctaaagtagccagtgcttgatt |
200 |
Q |
| |
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|||||||||| |||||| ||||||||| ||| ||||| |||||||| ||||||||||||||||||||||| ||||| |||| || |||||||||||||| |
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| T |
396056 |
tattagcagcctcggcactgtcttgacgaaggactctcgttaggaacagaaccaagttcactccaactccaaagaatgctagtgttgccagtgcttgatt |
395957 |
T |
|
| Q |
201 |
cactgcatt |
209 |
Q |
| |
|
||||||| |
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|
| T |
395956 |
agctgcatt |
395948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 3804554 - 3804762
Alignment:
| Q |
1 |
tgaaagattgtgcaggttaagtatcgaccccaataagagtcactgagaaatgctccaaccaatgagaacatgaaaacggttcctgtccacttgctcacat |
100 |
Q |
| |
|
|||||||| ||||| |||||||||| ||||||||||| ||||| || |||||||| | | ||| || ||| |||| ||||| ||||||||||| |||| |
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|
| T |
3804554 |
tgaaagatagtgcaagttaagtatcttccccaataagaatcactaaggaatgctcccaagagtgaaaaaatgtaaacagttccagtccacttgctgacat |
3804653 |
T |
|
| Q |
101 |
tattagcagcttcggcattgtcttgaccaagaactctagttaggaatagaaccaagttcactccaactccgaagaaagctaaagtagccagtgcttgatt |
200 |
Q |
| |
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| |||||||| |||||| ||||||||| ||| ||||| |||||||| |||||||||||||||||||| || ||||| || | || |||| ||||||||| |
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| T |
3804654 |
tgttagcagcctcggcactgtcttgacgaaggactcttgttaggaacagaaccaagttcactccaacaccaaagaatgccagtgttgccaatgcttgatt |
3804753 |
T |
|
| Q |
201 |
cactgcatt |
209 |
Q |
| |
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||||||| |
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|
| T |
3804754 |
agctgcatt |
3804762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 28 - 164
Target Start/End: Complemental strand, 2743570 - 2743434
Alignment:
| Q |
28 |
ccccaataagagtcactgagaaatgctccaaccaatgagaacatgaaaacggttcctgtccacttgctcacattattagcagcttcggcattgtcttgac |
127 |
Q |
| |
|
||||| |||||||||||||| || ||||||| | || || ||| |||| || |||||||||||||||||||| || ||||| || ||||||||||||| |
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|
| T |
2743570 |
ccccagtaagagtcactgaggaaagctccaagaagagaaaagatgtaaactgtccctgtccacttgctcacattgtttgcagcatcagcattgtcttgac |
2743471 |
T |
|
| Q |
128 |
caagaactctagttaggaatagaaccaagttcactcc |
164 |
Q |
| |
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| | |||||| |||| ||||| ||||| |||||||| |
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|
| T |
2743470 |
ccataactcttgttaaaaatagtaccaaattcactcc |
2743434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 28 - 182
Target Start/End: Complemental strand, 40742471 - 40742317
Alignment:
| Q |
28 |
ccccaataagagtcactgagaaatgctccaaccaatgagaacatgaaaacggttcctgtccacttgctcacattattagcagcttcggcattgtcttgac |
127 |
Q |
| |
|
||||||||||| ||||| || || || ||||| | ||||| ||| |||| || || ||||||||||| ||||| |||||||| | ||||| ||||||| |
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|
| T |
40742471 |
ccccaataagaatcactaaggaaagcaccaacaagagagaagatgtaaactgtgccagtccacttgctgacattgttagcagcagcagcattatcttgac |
40742372 |
T |
|
| Q |
128 |
caagaactctagttaggaatagaaccaagttcactccaactccgaagaaagctaa |
182 |
Q |
| |
|
| | || || || | ||| ||||| | ||||||||||||||| ||||| ||||| |
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| T |
40742371 |
ccaacacccttgtcaagaacagaactaggttcactccaactccaaagaatgctaa |
40742317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 9749642 - 9749674
Alignment:
| Q |
1 |
tgaaagattgtgcaggttaagtatcgaccccaa |
33 |
Q |
| |
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|||||||||||||||| |||||||||||||||| |
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|
| T |
9749642 |
tgaaagattgtgcaggctaagtatcgaccccaa |
9749674 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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