View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11120_high_5 (Length: 277)
Name: NF11120_high_5
Description: NF11120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11120_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 158; Significance: 4e-84; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 17 - 190
Target Start/End: Original strand, 4351948 - 4352121
Alignment:
| Q |
17 |
gaatcaaagttcgaatcccaatcacaacgtctaacctaagaatttcaaatttgttggaggaaggattggaatcaagctccatagtttggagctttccaca |
116 |
Q |
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| T |
4351948 |
gaatcaaagttcgaatcccaatcacaacgtctaacctaagaatttcaattttgttggtggaaggattggaatcaagctccatagtttggagctttccaca |
4352047 |
T |
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| Q |
117 |
tgttaaaggctatcaacgcaagaacctatctgcaggcattgtaagatttccaccattctgcatgataggataaa |
190 |
Q |
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| T |
4352048 |
tgttaaaggctatcaaggcaagaacctatctgcaggcattgtaagatttccatcattctgcatgataggataaa |
4352121 |
T |
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Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 87 - 179
Target Start/End: Original strand, 4357596 - 4357689
Alignment:
| Q |
87 |
atcaagctccatagtttggagctttccacatgttaaaggctatc-aacgcaagaacctatctgcaggcattgtaagatttccaccattctgcat |
179 |
Q |
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| T |
4357596 |
atcaagctccatattttggagctttccacatcttaaaagctatctcatgcaaaaacctatctgccggtattgtgagatttccaccattctgcat |
4357689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 229 - 277
Target Start/End: Original strand, 4352442 - 4352490
Alignment:
| Q |
229 |
attacagatttacagtgttactcaaccagcctaccataagggaaattcc |
277 |
Q |
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| T |
4352442 |
attacagatttacagtgttacttaaccagcctaccataagggaaattcc |
4352490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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