View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11120_high_6 (Length: 249)
Name: NF11120_high_6
Description: NF11120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11120_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 41512481 - 41512722
Alignment:
| Q |
1 |
ctcaattcaagttcttggctattgctcgttgcctgcaagtggtggtagtggttcgtttattctagtccatggggtaggtatctcagcgtgtttcattatt |
100 |
Q |
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| T |
41512481 |
ctcaatgcaagttcatggctatatctcgttgcctgcaagtggtggtagtggttcatttattctagtccatggggtaggtatctcagcgtgtttcattatt |
41512580 |
T |
|
| Q |
101 |
ttaattctttcatatatgtttgattgtttcctgctctgaatgttgtctatttgagtatttctgcccctttgcataaaaagaaccactgatgttctttttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41512581 |
ttaattctttcatatatgtttgattgtttcctgctctgaatgttgtctatttgagtatttctgcccctttgcataaaaagaaccactgatgttctttttg |
41512680 |
T |
|
| Q |
201 |
gctcaatacattttcctttcagtatcatggtagttcttctct |
242 |
Q |
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||||||||||||||||||||||||||||||||||| |||||| |
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| T |
41512681 |
gctcaatacattttcctttcagtatcatggtagtttttctct |
41512722 |
T |
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