View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11120_low_4 (Length: 363)
Name: NF11120_low_4
Description: NF11120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11120_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 18 - 353
Target Start/End: Complemental strand, 23423344 - 23423009
Alignment:
| Q |
18 |
tttcacttgatcttccaaaaagaacagggtcaggaaaatcctttaccttaaaagaaacatttgaaactggaatgtcaaatgtttttgttgtgtccaagaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
23423344 |
tttcacttgatcttccaaaaagaacagggtcaggaaaatcttttaccttaaaagaaacatttgaaactggaatgtcaaatgtttttgttgtgtccatgaa |
23423245 |
T |
|
| Q |
118 |
ctcagaggaaacactctcatctagtttgggaagattaagacagaattgaagtgatataactgatgaagtagcgaaaatataagacataaggttgaatttt |
217 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23423244 |
ctcaaaggaaacactctcatctagtttgggaagattaagacagaattgaagtgatataactgatgaagtagcgaaaatataagacataaggttgaatttt |
23423145 |
T |
|
| Q |
218 |
ttagcgatgtcgattacatcgcttgagaaaagatcaaaaaccaaacaaacaaagtttgtttttgaacaagttaccattttgttaacttcttgatgcaaat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23423144 |
ttagcgatgtcgattacatcgcttgagaaaagatcaaaaaccaaacaaacaaagtttgtttttgaacaagttaccattttgttaacttcttgatgcaaat |
23423045 |
T |
|
| Q |
318 |
agggtatagagtgtttaactgtgagtttcatctgtg |
353 |
Q |
| |
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||||||||||||||||||||||||||||||| |||| |
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| T |
23423044 |
agggtatagagtgtttaactgtgagtttcatttgtg |
23423009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 18 - 353
Target Start/End: Original strand, 549284 - 549619
Alignment:
| Q |
18 |
tttcacttgatcttccaaaaagaacagggtcaggaaaatcctttaccttaaaagaaacatttgaaactggaatgtcaaatgtttttgttgtgtccaagaa |
117 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
549284 |
tttcacttgatcttccaaaaagaacagggtcaggaaaatcatttaccttaaaagaaacatttgaaactggaatgtcaaatgtttttgttgtgtccatgaa |
549383 |
T |
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| Q |
118 |
ctcagaggaaacactctcatctagtttgggaagattaagacagaattgaagtgatataactgatgaagtagcgaaaatataagacataaggttgaatttt |
217 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
549384 |
ctcaaaggaaacactctcatctagtttgggaagattaagacagaattgaagtgatataactgatgaagtagcgaaaatataagacataaggttgaatttt |
549483 |
T |
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| Q |
218 |
ttagcgatgtcgattacatcgcttgagaaaagatcaaaaaccaaacaaacaaagtttgtttttgaacaagttaccattttgttaacttcttgatgcaaat |
317 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
549484 |
ttagcgatgtcgattacatcacttgagaaaagatcaaaaaccaaaccaacaaagtttgtttttgaacaagttacgattttgttaacttcttgatgcaaat |
549583 |
T |
|
| Q |
318 |
agggtatagagtgtttaactgtgagtttcatctgtg |
353 |
Q |
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||||||||||||||||||||||||||||||| |||| |
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| T |
549584 |
agggtatagagtgtttaactgtgagtttcatttgtg |
549619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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