View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11120_low_6 (Length: 326)
Name: NF11120_low_6
Description: NF11120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11120_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 41512267 - 41511963
Alignment:
| Q |
1 |
agcgaataaatacagatactgtgatcaaaactagtcatataacctgaacgaacaaagaattatcttacctaccactgtccttcaccttgccttcaaacac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41512267 |
agcgaataaatacagatactgtgatcaaaactagtcatataacctgaacgaacaaagaattatcttacctaccactgtccttcaccttgccttcaaacac |
41512168 |
T |
|
| Q |
101 |
cacctcatccgcctatagcaaaacttaatcgatgagaccaccggaattnnnnnnnttaatccagtcatgacacatcgtaaagttatttagatttcatacc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41512167 |
cacctcatccgcctatagcaaaacttaatcgatgagaccaccggaatt-aaaaaattaatccagtcatgacacatcgtaaagttatttagatttcatacc |
41512069 |
T |
|
| Q |
201 |
cgtccaccaaggccgatgctaacacgatctaaaaccttaaagtctgacattttgaacctcataacatgatctgtttcctcctccaagcaaacggaagagg |
300 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41512068 |
cgtccaccaaggccaatgctaacacgatctaaaaccttaaagtctgacattttgaacctcataacatgatctgtttcctcctccaagcaaacggaagagg |
41511969 |
T |
|
| Q |
301 |
tctttg |
306 |
Q |
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|||||| |
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| T |
41511968 |
tctttg |
41511963 |
T |
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