View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11120_low_9 (Length: 255)
Name: NF11120_low_9
Description: NF11120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11120_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 31082987 - 31083237
Alignment:
| Q |
1 |
acagcaccatacactccacaacagaatggtgttgtagagaggaaaaaccgaacaattatggagatggcaaggtgcttacttcatgataaaggtttgccaa |
100 |
Q |
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| T |
31082987 |
acagcaccatacactccacaacagaatggtgttgtagagaggaaaaaccgaacaattatggagatggcaaggtgcttacttcatgataaaggtttgccaa |
31083086 |
T |
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| Q |
101 |
agaaattttgggcagaggctgcaaatactgcagtttttctgctgaacagattgccaacaaaagctgtgcagaaaaagactccatttgaagcttggcatag |
200 |
Q |
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| T |
31083087 |
agaaattttgggcagaggctgcaaatactgcagtttttctgctgaacagattgccaacaaaagctgtgcagaaaaagactccatttgaagcttggcatag |
31083186 |
T |
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| Q |
201 |
cagcaaaccaaagctaattaatctgaagacattcggctgcctatgcttctc |
251 |
Q |
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| T |
31083187 |
cagcaaaccaaagctaattaatctgaagacattcggctgcctatgtttctc |
31083237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 9308210 - 9308460
Alignment:
| Q |
1 |
acagcaccatacactccacaacagaatggtgttgtagagaggaaaaaccgaacaattatggagatggcaaggtgcttacttcatgataaaggtttgccaa |
100 |
Q |
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| T |
9308210 |
acagcaccatacactccacaacagaatggtgttgtagagaggaaaaaccgaacaattatggagatggcaaggtgcttacttcatgataaaggtttgccaa |
9308309 |
T |
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| Q |
101 |
agaaattttgggcagaggctgcaaatactgcagtttttctgctgaacagattgccaacaaaagctgtgcagaaaaagactccatttgaagcttggcatag |
200 |
Q |
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| T |
9308310 |
agaaattttgggcagaggctacaaatactgcagtttttctgctgaacagattgtcaacaaaagctgtgcagaaaaagactccatttgaagcttggcatag |
9308409 |
T |
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| Q |
201 |
cagcaaaccaaagctaattaatctgaagacattcggctgcctatgcttctc |
251 |
Q |
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| T |
9308410 |
cagcaaaccaaagctaattaatctgaagacattcggctgcctatgtttctc |
9308460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 125
Target Start/End: Original strand, 32147757 - 32147827
Alignment:
| Q |
55 |
attatggagatggcaaggtgcttacttcatgataaaggtttgccaaagaaattttgggcagaggctgcaaa |
125 |
Q |
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| T |
32147757 |
attatggagatggaaagatgcttgctacatgaaaaagattttccaaaaaagttgtgggcagaggctgcaaa |
32147827 |
T |
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