View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11121_high_1 (Length: 802)
Name: NF11121_high_1
Description: NF11121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11121_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 702; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 702; E-Value: 0
Query Start/End: Original strand, 6 - 795
Target Start/End: Complemental strand, 38892477 - 38891683
Alignment:
| Q |
6 |
taatgttttaaggtttttagcgaagatatgatgtctccatcgcttataatcataggtaattggtttgttgttgctttcagtgctccttcagaccacccaa |
105 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||| |
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| T |
38892477 |
taatgttttaaggttttgagcgaagatatgatgtctccatcgcttataatcataggtaattggttcgctgttgctttccgtgctccttcagaccacccaa |
38892378 |
T |
|
| Q |
106 |
caactaatataagagcttttggtttggaagtgttgttttggaaggttctagcttggaaagacttggtacttagacaagtccattgtgacttgacctctct |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
38892377 |
caactaatataagagcttttggtttggaagtgttgttttggaaggttctagctaggaaagacttggtacttagacgagtccattgtgacttgacctctct |
38892278 |
T |
|
| Q |
206 |
ttattgggaacctctctagtgcatagttgtggtatggatacaattacaatcacaagtttcgtcgtgaagtttggacgagagagaattgatggaagaatca |
305 |
Q |
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||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |
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| T |
38892277 |
ttattaggaacttctctagtgcatagttgtggtatggatacaattacaatcacaagttccgttgtgaagtttggacgagagagaattgatggaagaatca |
38892178 |
T |
|
| Q |
306 |
ttttttggcttgtggaaaattcaagttaacaatgtgttgatacaatcaatattacacaaggtgtttcttagtacatggacattgattgaaattgatgcaa |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38892177 |
ttttttggcttgtggaaaattcaagttaacaatgtgttgatacaatcaatattacacaaggtgtttcttagtacatggacattgattgaaattgatgcaa |
38892078 |
T |
|
| Q |
406 |
agtgtgtgtgagattacttcggcaattgaacaattttcaatcaacatggaagctgcatcataagttttcaaactaattttcaacatgtgaaagttcatgg |
505 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |
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| T |
38892077 |
agtgtgtgtgagattacttcggcaattgaacaattttcaatcaacatggaagctgcaccataagttttcaaactaattttcgacatgtgaaagttcatgg |
38891978 |
T |
|
| Q |
506 |
agtggtttaacttcaagtaaaatatactctttatggtggattatgatagttttttgaatgatgattgccggtgacggcaatgacagtatatgtaccattt |
605 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
38891977 |
agtggtttaacttcaagtaaaatatactctttatggtggattatgatagttttttgaatgatgattgccggtgacggcaatgacaatatatgtaccattt |
38891878 |
T |
|
| Q |
606 |
tcaatggagatgaagattgttggtattagttgaaaaatatatgttgaagaagtctcacattac---gtattataaaggaaaaggaaggttgggac--tat |
700 |
Q |
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| T |
38891877 |
tcaatggagatgaagattgttggtgttagttgaaaaatatatgttgaagaagtctcacattacctagtattataaaggaaaagggaggttgggactatat |
38891778 |
T |
|
| Q |
701 |
atatatggactataattttttgttatatgacacactagccaaaaacacattaaacttctatggaactttttcttttcttttctcttgtacctttg |
795 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |
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| T |
38891777 |
atatatggactataattttttgttatatgacacactagccaaaaacacattaaacttgtatggaattttttcttttcttttctcttgtacctttg |
38891683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 337 - 421
Target Start/End: Complemental strand, 31795729 - 31795644
Alignment:
| Q |
337 |
atgtgttgatacaatcaatattacacaaggtgtttcttagtacatggacattgattgaaattgatgcaaagtgtg-tgtgagatta |
421 |
Q |
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|||||||||||||||||| ||||||||||||||| |||||||| | ||||| |||| |||||| ||||||||| |||||||||| |
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| T |
31795729 |
atgtgttgatacaatcaagattacacaaggtgttgattagtacacgcgcattggttgacattgatacaaagtgtgttgtgagatta |
31795644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 509 - 546
Target Start/End: Original strand, 29392515 - 29392552
Alignment:
| Q |
509 |
ggtttaacttcaagtaaaatatactctttatggtggat |
546 |
Q |
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| T |
29392515 |
ggtttaacttcaagtaaagtataccctttatggtggat |
29392552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 386 - 572
Target Start/End: Complemental strand, 34981268 - 34981081
Alignment:
| Q |
386 |
attgattgaaattgatgcaaagtgtgtgtgagattacttcggcaattgaacaattttcaatcaacatggaagctgcatcataagttttcaaactaatttt |
485 |
Q |
| |
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||||||||| ||||||||||||||||| |||||||| || | ||||| | ||||||| ||| ||||||| |||| ||||||||| | | ||||| |
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| T |
34981268 |
attgattgacattgatgcaaagtgtgtttgagattatgtcagtggttgaagagttttcaaccaatatggaagttgcacgataagtttttagcatgatttt |
34981169 |
T |
|
| Q |
486 |
caacatgtgaaagttcatggagtggtttaacttcaagtaaaatatactctttatggtggattatgatagtt-ttttgaatgatgattg |
572 |
Q |
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|||||||||| || ||||||||||||| ||| ||| || |||| | |||||| |||| |||||||||| ||||||| ||||||| |
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| T |
34981168 |
tgacatgtgaaaattattggagtggtttaaattcgagtgaagtatattttttatgatggagtatgatagttcttttgaactatgattg |
34981081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 503 - 553
Target Start/End: Original strand, 16388148 - 16388197
Alignment:
| Q |
503 |
tggagtggtttaacttcaagtaaaatatactctttatggtggattatgata |
553 |
Q |
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||||||||||||||||||||| | |||||||||||||||||| ||||||| |
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| T |
16388148 |
tggagtggtttaacttcaagtgat-tatactctttatggtggagtatgata |
16388197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 447 - 533
Target Start/End: Complemental strand, 2615244 - 2615158
Alignment:
| Q |
447 |
caacatggaagctgcatcataagttttcaaactaattttcaacatgtgaaagttcatggagtggtttaacttcaagtaaaatatact |
533 |
Q |
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||||||| ||| ||||| ||||||||||| | ||||||||||||| ||| ||| ||||||| |||||||||||||||| |||||| |
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| T |
2615244 |
caacatgaaagttgcattataagttttcagccggattttcaacatgtaaaaattcttggagtgttttaacttcaagtaaagtatact |
2615158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000007; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 315 - 405
Target Start/End: Original strand, 12380575 - 12380664
Alignment:
| Q |
315 |
ttgtggaaaattcaagttaacaatgtgttgatacaatcaatattacacaaggtgtttcttagtacatggacattgattgaaattgatgcaa |
405 |
Q |
| |
|
||||| ||||||||||| || |||||||||||||| |||| ||||||||| | || |||||| ||| |||||||||| |||||||||| |
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| T |
12380575 |
ttgtgaaaaattcaagtaaaaaatgtgttgatacattcaagattacacaa-atattgattagtatatgagcattgattgacattgatgcaa |
12380664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 315 - 405
Target Start/End: Original strand, 12384642 - 12384731
Alignment:
| Q |
315 |
ttgtggaaaattcaagttaacaatgtgttgatacaatcaatattacacaaggtgtttcttagtacatggacattgattgaaattgatgcaa |
405 |
Q |
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||||| ||||||||||| || |||||||||||||| |||| ||||||||| | || |||||| ||| |||||||||| |||||||||| |
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| T |
12384642 |
ttgtgaaaaattcaagtaaaaaatgtgttgatacattcaagattacacaa-atattgattagtatatgagcattgattgacattgatgcaa |
12384731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 315 - 364
Target Start/End: Original strand, 12363599 - 12363648
Alignment:
| Q |
315 |
ttgtggaaaattcaagttaacaatgtgttgatacaatcaatattacacaa |
364 |
Q |
| |
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||||| ||||||||||| || |||||||||||||| |||| ||||||||| |
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| T |
12363599 |
ttgtgaaaaattcaagtaaaaaatgtgttgatacattcaagattacacaa |
12363648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 447 - 536
Target Start/End: Complemental strand, 21932311 - 21932222
Alignment:
| Q |
447 |
caacatggaagctgcatcataagttttcaaactaattttcaacatgtgaaagttcatggagtggtttaacttcaagtaaaatatactctt |
536 |
Q |
| |
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||||||||||| |||| |||||||||||| | | |||| |||||||||||||| || | | ||| |||||||||| || ||||||||| |
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| T |
21932311 |
caacatggaagttgcacaataagttttcaacttgaatttcgacatgtgaaagttcttgaaatagttcaacttcaagtgaagtatactctt |
21932222 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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