View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11121_high_17 (Length: 483)
Name: NF11121_high_17
Description: NF11121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11121_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 106 - 479
Target Start/End: Original strand, 51795123 - 51795496
Alignment:
| Q |
106 |
attaatttctcgagagctttttgaaacttaaatgagtggttaaattattttccaaaagtttaaaccttattgcaaggctaaacttgagtttaaatttaga |
205 |
Q |
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| T |
51795123 |
attaatttttcgagagcttttggaaacttaaatgagtggttaaattatttttcaaaagtctgaaccttattgtaaggctaaactcgagtttaaatttaaa |
51795222 |
T |
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| Q |
206 |
actttagttaaactaaaagagactctcatagttaatacgtaactataaaagtatgcctgttaattaagtaaagttttgttttaaaaagaaaagggaatta |
305 |
Q |
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| T |
51795223 |
actttagttaaactaaaagagactctcataactaatgcgtaactatacaagtatgcatgttaattaagtaaagttttgttttaaaaagaaaagggaatta |
51795322 |
T |
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| Q |
306 |
agcaaagttaatataccatatactatgtgtttctgcttatattgtaaccttcattggttgttattttaaccatatttcgtgtcggctttgctcagtttac |
405 |
Q |
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| T |
51795323 |
agcaaagttaatatagcatgtactatgtgtttctgcttatattgtaaccttcattggttgttattttaaccatatttcgtgtcggctttgctcagtttac |
51795422 |
T |
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| Q |
406 |
acacagaagaaaaataaaaagctgttttgcttttgttttgttctctgtcacaaacaacttagttcttctctctc |
479 |
Q |
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| T |
51795423 |
acacagaagaaaaataaaaagctgttttgcttttgttttgttctctgtcacaaacaacttagttcttttctctc |
51795496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 51795070 - 51795126
Alignment:
| Q |
17 |
aactattttagatttaaacgaggtattctctgcatacaacaccaactataaagatta |
73 |
Q |
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| T |
51795070 |
aactattttaaatttaaactaggtattctctgcatataacatcaactataaagatta |
51795126 |
T |
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