View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11121_high_18 (Length: 469)
Name: NF11121_high_18
Description: NF11121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11121_high_18 |
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Alignment Details
Target: chr7 (Bit Score: 320; Significance: 1e-180; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 19 - 456
Target Start/End: Original strand, 22767201 - 22767638
Alignment:
| Q |
19 |
aaccaacatgtgcttcattggtt-ggttcagtttggaagaagtgattgtaaaatccaaatcaaacctaccaattagtagattataaaaaatagacacatt |
117 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| || |||||||||||||||||| |
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| T |
22767201 |
aaccaacatgtgcttcattggtttggttcagtttggaagaagtcattgtaaaatccaaatcaaacctaccaattagtatataataaaaaatagacacatt |
22767300 |
T |
|
| Q |
118 |
aannnnnnnnnnnnnnaaaggagacacattaaatatgtttaaattgtatatttttgtttgtacatttttgtgtaactcacaattgtatagttgatgaatt |
217 |
Q |
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|| |||| |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |
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| T |
22767301 |
aaatgtttttttttt-aaagaagacacattaaatatgttaaaattgtatatttttgtttgtacatttttgtgcaactcacaattctatagttgatgaatt |
22767399 |
T |
|
| Q |
218 |
acctgaaagaaaccccagtccttgcatgcaatctcaagtttcagtaactcctccatgttcccatttgaaagcagtgtaaaatcaatgataggaatctctg |
317 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||||||||| |
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| T |
22767400 |
acctgaaagaaaccccactccttgcatgcaatctcaagtttcagtaactcctccatgctcccatttgaaagcagtgtaaaatcaattacaggaatctctg |
22767499 |
T |
|
| Q |
318 |
aagaaagttgaggcatgtagtttactttctccatttcttcttcattcctcacatattttgttggaacttgcaaaggattcatcttcaccatttcttgaac |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
22767500 |
aagaaagttgaggcatgtagtttactttctccatttcttcttcattcctcacatattttgttggaacttccaaaggattcatcttcaccatttcttgaac |
22767599 |
T |
|
| Q |
418 |
atttggtactggtaaagatggagcaaaaatgggtgcttc |
456 |
Q |
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|||||| ||||| |||||||||||| || |||||||||| |
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| T |
22767600 |
atttggaactggcaaagatggagcataagtgggtgcttc |
22767638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 168 - 460
Target Start/End: Original strand, 22780467 - 22780759
Alignment:
| Q |
168 |
tttttgtttgtacatttttgtgtaactcacaattgtatagttgatgaattacctgaaagaaaccccagtccttgcatgcaatctcaagtttcagtaactc |
267 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
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| T |
22780467 |
tttttgtttgtacatttttgtgtaactcacaattgtatagtcgatgaattacctgaaagaaaccccactccttgcatgcaatctcaagtttcagcaactc |
22780566 |
T |
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| Q |
268 |
ctccatgttcccatttgaaagcagtgtaaaatcaatgataggaatctctgaagaaagttgaggcatgtagtttactttctccatttcttcttcattcctc |
367 |
Q |
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|||||||||||||||||||||| ||||||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22780567 |
ctccatgttcccatttgaaagctgtgtaaaatcaattacaggaatctcagaagaaagttgaggcatgtagtttactttctccatttcttcttcattcctc |
22780666 |
T |
|
| Q |
368 |
acatattttgttggaacttgcaaaggattcatcttcaccatttcttgaacatttggtactggtaaagatggagcaaaaatgggtgcttcatct |
460 |
Q |
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| T |
22780667 |
acatattttgttggaacttgcaaaggattaaccttcaccatttcttgaacatttggtactggtaaagatggagcaaaaatgggtgcttcatct |
22780759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 203 - 456
Target Start/End: Original strand, 22784078 - 22784331
Alignment:
| Q |
203 |
tatagttgatgaattacctgaaagaaaccccagtccttgcatgcaatctcaagtttcagtaactcctccatgttcccatttgaaagcagtgtaaaatcaa |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| || ||| ||||||||||||||||||||||||||| |
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| T |
22784078 |
tatagttgatgaattacctgaaagaaaccccagtccttgcatgcaacctcaagtttcagcaactcttcgatgctcccatttgaaagcagtgtaaaatcaa |
22784177 |
T |
|
| Q |
303 |
tgataggaatctctgaagaaagttgaggcatgtagtttactttctccatttcttcttcattcctcacatattttgttggaacttgcaaaggattcatctt |
402 |
Q |
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| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
22784178 |
taaaaggaatctctgaagaaagttgaggcatgtagtttactttctccatttcttcttcattcctcacatattttgttggaacttccaaaggattcatctt |
22784277 |
T |
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| Q |
403 |
caccatttcttgaacatttggtactggtaaagatggagcaaaaatgggtgcttc |
456 |
Q |
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||||||||||||||||||||| ||||| |||||||||||| || |||||||||| |
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| T |
22784278 |
caccatttcttgaacatttggaactggcaaagatggagcataagtgggtgcttc |
22784331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 191 - 456
Target Start/End: Complemental strand, 16080445 - 16080180
Alignment:
| Q |
191 |
aactcacaattgtatagttgatgaattacctgaaagaaaccccagtccttgcatgcaatctcaagtttcagtaactcctccatgttcccatttgaaagca |
290 |
Q |
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|||||| |||| | ||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |
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| T |
16080445 |
aactcagaattctgtagctgaggaattacctgaaagaaaccccactccttgcatgcaatctcaagtttcaacaactcctccatgctcccatttgaaagca |
16080346 |
T |
|
| Q |
291 |
gtgtaaaatcaatgataggaatctctgaagaaagttgaggcatgtagtttactttctccatttcttcttcattcctcacatattttgttggaacttgcaa |
390 |
Q |
| |
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|| | |||||||||| ||| ||||| ||||||||||||| || | |||||||||||||||||||||| |||||||| |||||||| ||||||||||| |
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| T |
16080345 |
gtatgaaatcaatgacagggatctcaaaagaaagttgaggaatttcatttactttctccatttcttcttgtttcctcacgtattttgtaggaacttgcaa |
16080246 |
T |
|
| Q |
391 |
aggattcatcttcaccatttcttgaacatttggtactggtaaagatggagcaaaaatgggtgcttc |
456 |
Q |
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|||||| ||||||||||||||||||||||||||||| |||||||||||| |||| |||||||||| |
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| T |
16080245 |
cggattcttcttcaccatttcttgaacatttggtactagtaaagatggagaaaaattgggtgcttc |
16080180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 216 - 460
Target Start/End: Original strand, 22776579 - 22776823
Alignment:
| Q |
216 |
ttacctgaaagaaaccccagtccttgcatgcaatctcaagtttcagtaactcctccatgttcccatttgaaagcagtgtaaaatcaatgataggaatctc |
315 |
Q |
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||||||||||||||||||| ||| |||||||||||||||||||| | ||||| |||||||||||||||||||||||||| |||||||||| ||||||||| |
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| T |
22776579 |
ttacctgaaagaaaccccactccctgcatgcaatctcaagtttccgcaactcttccatgttcccatttgaaagcagtgttaaatcaatgacaggaatctc |
22776678 |
T |
|
| Q |
316 |
tgaagaaagttgaggcatgtagtttactttctccatttcttcttcattcctcacatattttgttggaacttgcaaaggattcatcttcaccatttcttga |
415 |
Q |
| |
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|| ||||| |||||| |||| | |||||| ||||||||||||| ||||||||| ||| | | ||||||||| ||||||| |||||||||||||||||| |
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| T |
22776679 |
cgatgaaaggtgaggcgtgtaatgtactttttccatttcttcttgattcctcacgtatcgtttaggaacttgcgaaggattaatcttcaccatttcttga |
22776778 |
T |
|
| Q |
416 |
acatttggtactggtaaagatggagcaaaaatgggtgcttcatct |
460 |
Q |
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||||||||||| |||||||||||||||||||| |||||||||||| |
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| T |
22776779 |
acatttggtaccggtaaagatggagcaaaaattggtgcttcatct |
22776823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 216 - 456
Target Start/End: Complemental strand, 23277185 - 23276945
Alignment:
| Q |
216 |
ttacctgaaagaaaccccagtccttgcatgcaatctcaagtttcagtaactcctccatgttcccatttgaaagcagtgtaaaatcaatgataggaatctc |
315 |
Q |
| |
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||||||||||||||||||| ||||||||||| || || | ||||| || ||| | | ||||||||| ||| || ||| ||||||||||| || | || |
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| T |
23277185 |
ttacctgaaagaaaccccactccttgcatgctatgtccaatttcaatagctcattcttgttcccatgtgagagtagtccaaaatcaatgactgggacctg |
23277086 |
T |
|
| Q |
316 |
tgaagaaagttgaggcatgtagtttactttctccatttcttcttcattcctcacatattttgttggaacttgcaaaggattcatcttcaccatttcttga |
415 |
Q |
| |
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|| |||| |||||||| || ||||| || |||||||||||| ||| |||||| || ||||| | |||||||||| || |||| |||||||| |
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| T |
23277085 |
agatgaaaagtgaggcatataaagaactttttcaatttcttcttcactccgaacatatctttcaggaaccttcaaaggattcttcctcacagtttcttga |
23276986 |
T |
|
| Q |
416 |
acatttggtactggtaaagatggagcaaaaatgggtgcttc |
456 |
Q |
| |
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| ||| ||||| ||||| | ||||||||| |||||||||| |
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| T |
23276985 |
atattaggtacaggtaagcaaggagcaaaagtgggtgcttc |
23276945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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