View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11121_high_2 (Length: 669)

Name: NF11121_high_2
Description: NF11121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11121_high_2
NF11121_high_2
[»] chr5 (8 HSPs)
chr5 (23-665)||(41523882-41524524)
chr5 (20-638)||(41514928-41515546)
chr5 (290-661)||(41499389-41499760)
chr5 (290-595)||(41503582-41503887)
chr5 (316-428)||(41519327-41519439)
chr5 (254-431)||(41503897-41504074)
chr5 (166-241)||(41503473-41503548)
chr5 (469-598)||(41702837-41702966)


Alignment Details
Target: chr5 (Bit Score: 619; Significance: 0; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 619; E-Value: 0
Query Start/End: Original strand, 23 - 665
Target Start/End: Original strand, 41523882 - 41524524
Alignment:
Q  23 cctccacaacagtgtcatttccgaactcatcgtcaagaaaatcatcttcatctctgtcttcaatattagcagccacaggatcaacaggtgacttcccctc 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41523882 cctccacaacagtgtcatttccgaactcatcgtcaagaaaatcatcttcatctctgtcttcaatattagcagccacaggatcaacaggtgacttcccctc 41523981  T
Q  123 actattaccaccaccagagacacctacactcttcaaaagattggtatcatcctccaatctcgaaagtcttccaaccagtcctctaaacttcttgtacata 222  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41523982 attattaccaccaccagagacacctacactcttcaaaagattggtatcatcctccaatctcgaaagtcttccaaccagtcctctaaacttcttgtacata 41524081  T
Q  223 gacccaagcaatatctcaatcttacgtttctcatcagccaacttactcttttctttccccaacctatttatagtttccaaaattttcttcaccgtttcct 322  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41524082 gacccgagcaatatctcaatcttacgtttctcatcagccaacttactcttttctttccccaacctatttatagtttccaaaattttcttcaccgtttcct 41524181  T
Q  323 tcacttcgccatttctaacctcaactccagccaaaacatttttatcaccctccaatacacgaaccttattcctaagcgcatcaaaagcattgctatcatc 422  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41524182 tcacttcgccatttctaacctcaactccagccaaaacatttttatcgccctccaatacacgaaccttattcctaagcgcatcaaaagcattgctatcatc 41524281  T
Q  423 taaccatttcttcttcgatttcctcagctccgaaacttcatgctccaatttaccaatcatttttctcaacacaccaagttcattattatcctccatcctc 522  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||    
T  41524282 taaccatttcttcttcgatttcctcagctccgaagcttcatgctccaatttaccaatcatttttctcaacacaccaagttgagtattatcctccatcctc 41524381  T
Q  523 ttttcattcaacttcctcaactccaaaatcttagcctctagctcaccattctttcttcttaacacatcaatttcatagctaccatcaacatattttttct 622  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41524382 ttttcattcaacttcctcaactccaaaatcttagcctctagctcaccattctttcttcttaacacatcaatttcatagctaccatcaacatattttttct 41524481  T
Q  623 tcaacttctcaacttcctcctctaattcattcttcttctcact 665  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  41524482 tcaacttctcaacttcctcctctaattcattcttcttctcact 41524524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 20 - 638
Target Start/End: Original strand, 41514928 - 41515546
Alignment:
Q  20 cagcctccacaacagtgtcatttccgaactcatcgtcaagaaaatcatcttcatctctgtcttcaatattagcagccacaggatcaacaggtgacttccc 119  Q
    |||||||| |||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| ||||||||||    
T  41514928 cagcctcctcaacagtgtcattttctaactcatcgtcaagaaaatcctcttcatctctgtcttcaatattagcagccataggatcaacatgtgacttccc 41515027  T
Q  120 ctcactattaccaccaccagagacacctacactcttcaaaagattggtatcatcctccaatctcgaaagtcttccaaccagtcctctaaacttcttgtac 219  Q
    |||| || |||||||||||||| ||||||||||||||||||| ||||||||||||||||| | |||||||||||||| ||||||| ||||||| ||||||    
T  41515028 ctcattactaccaccaccagaggcacctacactcttcaaaagtttggtatcatcctccaaccccgaaagtcttccaagcagtcctttaaactttttgtac 41515127  T
Q  220 atagacccaagcaatatctcaatcttacgtttctcatcagccaacttactcttttctttccccaacctatttatagtttccaaaattttcttcaccgttt 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  |  |||||||||  |||    
T  41515128 atagacccaagcaatatctcaatcttacgtttctcatcagccaacttactcttttctttccccaacctacttatagtttccttatatttcttcactattt 41515227  T
Q  320 ccttcacttcgccatttctaacctcaactccagccaaaacatttttatcaccctccaatacacgaaccttattcctaagcgcatcaaaagcattgctatc 419  Q
    |||||| |||||||||| |||||||||| ||||||||| |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||    
T  41515228 ccttcaattcgccatttttaacctcaaccccagccaaagcattcttatcaccctccaatacacgaaccttatttctaagcgcatcaaaagcattgccatc 41515327  T
Q  420 atctaaccatttcttcttcgatttcctcagctccgaaacttcatgctccaatttaccaatcatttttctcaacacaccaagttcattattatcctccatc 519  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |||||    
T  41515328 atctaaccatttcttcttcgatttcctcaactccgaaacttcatgctccaatttaccaatcattttcctcaatacaccaagttcattattatcccccatc 41515427  T
Q  520 ctcttttcattcaacttcctcaactccaaaatcttagcctctagctcaccattctttcttcttaacacatcaatttcatagctaccatcaacatattttt 619  Q
    |||||||||||||||||||||||||||||||| | || |||||  ||||||||||||||||||||||||| |||||||| ||||||||||| | |||| |    
T  41515428 ctcttttcattcaacttcctcaactccaaaatttcagactctaattcaccattctttcttcttaacacataaatttcattgctaccatcaaaacatttct 41515527  T
Q  620 tcttcaacttctcaacttc 638  Q
     ||||||||| ||||||||    
T  41515528 ccttcaacttttcaacttc 41515546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 290 - 661
Target Start/End: Original strand, 41499389 - 41499760
Alignment:
Q  290 ttatagtttccaaaattttcttcaccgtttccttcacttcgccatttctaacctcaactccagccaaaacatttttatcaccctccaatacacgaacctt 389  Q
    |||||||||||||| | |||||||  |||||||||| ||| ||| ||  || || || |||||||||| |||| ||||||||||||| ||||||||||||    
T  41499389 ttatagtttccaaattcttcttcattgtttccttcaattcaccagtttcaatcttaagtccagccaaatcattcttatcaccctccattacacgaacctt 41499488  T
Q  390 attcctaagcgcatcaaaagcattgctatcatctaaccatttcttcttcgatttcctcagctccgaaacttcatgctccaatttaccaatcatttttctc 489  Q
      | |  | | |||||  ||||||||||||||| |||||||| |||||| | ||||||| |||| ||||||||||||| |||||||||||||||| |||     
T  41499489 gcttcgtacctcatcatgagcattgctatcatcaaaccattttttcttcaacttcctcaactccaaaacttcatgctctaatttaccaatcatttctctt 41499588  T
Q  490 aacacaccaagttcattattatcctccatcctcttttcattcaacttcctcaactccaaaatcttagcctctagctcaccattctttcttcttaacacat 589  Q
    | |||| ||||||||||||||||||||| | |||||||||| || ||||||||||||||||| | ||  ||||  ||| || ||||| |||||||||||     
T  41499589 agcacaacaagttcattattatcctccagcatcttttcatttaatttcctcaactccaaaatttcagattctaattcaacaatctttgttcttaacacac 41499688  T
Q  590 caatttcatagctaccatcaacatattttttcttcaacttctcaacttcctcctctaattcattcttcttct 661  Q
    ||| ||||| |||||||||||||  ||| | |||||| |||  ||||||  |||||| |||||| |||||||    
T  41499689 caacttcattgctaccatcaacaagtttctccttcaaattcataacttcaacctctagttcattgttcttct 41499760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 290 - 595
Target Start/End: Original strand, 41503582 - 41503887
Alignment:
Q  290 ttatagtttccaaaattttcttcaccgtttccttcacttcgccatttctaacctcaactccagccaaaacatttttatcaccctccaatacacgaacctt 389  Q
    |||||||||||||| | |||||||  |||||||||| ||| ||| || ||| || ||   |||||||| ||||||||||||||||||  ||| |||||||    
T  41503582 ttatagtttccaaattcttcttcattgtttccttcaattcaccagttttaatcttaaggtcagccaaatcatttttatcaccctccagaacatgaacctt 41503681  T
Q  390 attcctaagcgcatcaaaagcattgctatcatctaaccatttcttcttcgatttcctcagctccgaaacttcatgctccaatttaccaatcatttttctc 489  Q
      | | |||| |||||  |||| ||||||  |||||| |||| |||||| |  |||| | |||| ||||||||||||| |||||||||||||||| |||     
T  41503682 gcttcgaagctcatcatgagcactgctattttctaacaattttttcttcaacctccttaactccaaaacttcatgctctaatttaccaatcatttctctt 41503781  T
Q  490 aacacaccaagttcattattatcctccatcctcttttcattcaacttcctcaactccaaaatcttagcctctagctcaccattctttcttcttaacacat 589  Q
    | |||| ||||||| ||||||||||||| | |||||||||| || ||||||||||||||||  | || |||||| | |||| |||| |||||||||||||    
T  41503782 agcacaacaagttcgttattatcctccaccatcttttcatttaatttcctcaactccaaaacttcagactctagtttaccagtcttacttcttaacacat 41503881  T
Q  590 caattt 595  Q
    ||||||    
T  41503882 caattt 41503887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 316 - 428
Target Start/End: Original strand, 41519327 - 41519439
Alignment:
Q  316 gtttccttcacttcgccatttctaacctcaactccagccaaaacatttttatcaccctccaatacacgaaccttattcctaagcgcatcaaaagcattgc 415  Q
    |||||||||| |||||||||| ||| ||||| |||||||||| |||| || ||| |||||||||||| |||| |  | | |||| |||||| |||||| |    
T  41519327 gtttccttcaattcgccatttttaatctcaattccagccaaagcattcttttcaacctccaatacaccaaccatgcttcgaagctcatcaagagcattac 41519426  T
Q  416 tatcatctaacca 428  Q
    |||||||||||||    
T  41519427 tatcatctaacca 41519439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 254 - 431
Target Start/End: Original strand, 41503897 - 41504074
Alignment:
Q  254 catcagccaacttactcttttctttccccaacctatttatagtttccaaaattttcttcaccgtttccttcacttcgccatttctaacctcaactccagc 353  Q
    |||||||||| || || |||||||||| ||||    |||||||| |||||   ||| |||| ||| |||||| ||||| |||| ||  || || | ||||    
T  41503897 catcagccaatttgctgttttctttcctcaactcgcttatagttgccaaatacttcgtcacagttgccttcaattcgctatttttactcttaatttcagc 41503996  T
Q  354 caaaacatttttatcaccctccaatacacgaaccttattcctaagcgcatcaaaagcattgctatcatctaaccattt 431  Q
    |||| ||||||| ||| |||||||||||| ||||||  |   |||| |||||| |||||| |||||||| ||||||||    
T  41503997 caaatcatttttttcatcctccaatacaccaaccttcctttgaagctcatcaagagcatttctatcatcaaaccattt 41504074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 241
Target Start/End: Original strand, 41503473 - 41503548
Alignment:
Q  166 gtatcatcctccaatctcgaaagtcttccaaccagtcctctaaacttcttgtacatagacccaagcaatatctcaa 241  Q
    |||||||||||||| || |||| |||||||  ||||||||| ||||| ||||| | ||||||||| ||||| ||||    
T  41503473 gtatcatcctccaaccttgaaactcttccagtcagtcctctgaactttttgtaaaaagacccaagtaatatatcaa 41503548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 469 - 598
Target Start/End: Complemental strand, 41702966 - 41702837
Alignment:
Q  469 aatttaccaatcatttttctcaacacaccaagttcattattatcctccatcctcttttcattcaacttcctcaactccaaaatcttagcctctagctcac 568  Q
    |||| ||||||||||||||| |||||||| | |||| ||| ||| |||  ||  ||||  || |||||| ||||||||||||  | |  |||||  |||     
T  41702966 aattcaccaatcatttttcttaacacacccaattcaatatcatcttcctcccattttttctttaacttcttcaactccaaaacttcattctctaattcaa 41702867  T
Q  569 cattctttcttcttaacacatcaatttcat 598  Q
    || ||||||||||||||||||||| |||||    
T  41702866 caatctttcttcttaacacatcaacttcat 41702837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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