View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11121_high_21 (Length: 453)
Name: NF11121_high_21
Description: NF11121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11121_high_21 |
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Alignment Details
Target: chr4 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 16 - 435
Target Start/End: Original strand, 55667261 - 55667680
Alignment:
| Q |
16 |
agcgtatgaagataaatgcgtatgaggatgaatttattatgaaatcacgaccaatgaataattagtagtgcgcaagcgcaaccaaaattgcagacaatgt |
115 |
Q |
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| T |
55667261 |
agcgtatgaagatgaatgcgtatgaggatgaattcagtatgaaatcacgatcaatgaataattagtagtgcgcaagcgcaaccaaaattgcagacaatgt |
55667360 |
T |
|
| Q |
116 |
taagatcgagtcattgatacaaattcaagttaaagaatctgttgtaaggatctagaggaactacatgcatccaaaattccaacgccaaggggcagtcact |
215 |
Q |
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| T |
55667361 |
taagatcgagccattgatacaaattcaagttaaagaatctgttgtaaggatctagaggaactacataaatccaaaattccaacgccaaggagcagtcact |
55667460 |
T |
|
| Q |
216 |
aaaaacatgcacaatagtttctagtcaatctctacaccaattacaagaataatatcccaattgcatactgcccttttgtttgttagtcacctgtttctgt |
315 |
Q |
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| T |
55667461 |
aaaaacatgcacaatagtttctagtcaatctctacaccaattacaagaataatatcccaattgcatactgcccttttgtttgttagtcacctgtttctgt |
55667560 |
T |
|
| Q |
316 |
ttgccatgaattacgaactaaacaaaactactcaacctcatgctttcaatcgttgtgtattttgaaaattggaaaaatatatgaataaattgtgcagtgt |
415 |
Q |
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|||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55667561 |
ttgccatgaattacgaaccaaacaaaactcctcaacctcatgctttcaatcgttgtgtattttgaaaattggaaaaatatatgaataaattgtgcagtgt |
55667660 |
T |
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| Q |
416 |
gtagttctagatgtatttgt |
435 |
Q |
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| T |
55667661 |
gtagttctagatgtgtttgt |
55667680 |
T |
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