View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11121_high_3 (Length: 621)
Name: NF11121_high_3
Description: NF11121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11121_high_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 559; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 559; E-Value: 0
Query Start/End: Original strand, 11 - 605
Target Start/End: Complemental strand, 41523514 - 41522920
Alignment:
| Q |
11 |
atgaactgtaaaacctcaaataaattttggttctagggaggtttttcttcgccatatgcaatggacaagacatgtattgactcagttgcagaacaaacat |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41523514 |
atgaactgtaaaacctcaaataaattttggttctagggaggtttttcttcaccatatgcaattgacaagacatgtattgactcagttgcagaacaaacat |
41523415 |
T |
|
| Q |
111 |
gctgagaaagctactttggaagataaattaatgaggcgaagcacaaatttcagccttgagacagggctgtgcttcaggagcccaaaaacattagtaactt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
41523414 |
gctgagaaagctactttggaagataaattaatgaggcgaagcactaatttcagccttgagacagggctgcgcttcaggagcccaaaaacattagtaactt |
41523315 |
T |
|
| Q |
211 |
tactagaataggagagatgttcctagagaactgattgtagaccaactgtgtcatgattgttggtcaaggctagaaggctcaagaaagtggttgagatgcc |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41523314 |
tactagaataggagagatgttcctagagaactgattgtagaccaattgtgtcatgattgttggtcaaggctagaaggctcaagaaagtggttgagatgcc |
41523215 |
T |
|
| Q |
311 |
agggtctagtggtaggtagttattcagtagtgtcgtgaacgagtagtgaatgagagtggtaatgtaggggaggttacttcgtacctagaaagagatggcg |
410 |
Q |
| |
|
|||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41523214 |
agggtctagtgggagctagttattcagtagtgtcgtgaacgagtagtgaatgagagtggtaatgtaggggaggttacttcgtacctagaaagagatggcg |
41523115 |
T |
|
| Q |
411 |
tgaatgatcattcttttgacctctttaggaacttatctcttggaaagtgttaagtatatattatatacttgctcttttctatttatgttgttttttcatc |
510 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41523114 |
tgaatgatcattctttcgacctctttaggaacttatctcttggaaagtgttaagtatatattatatacttgctcttttctatttatgttgttttttcatc |
41523015 |
T |
|
| Q |
511 |
cttctgaaaccatttattgtttatactttgaagcttactttgagtcttgcttcttacctagaatgttattattattattttacactccatgtttc |
605 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
41523014 |
cttctgaaaccatttattgtttatactttgaagcttactttgagtcttgcttcttacctagaatgttattattattattttacactccacgtttc |
41522920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 171 - 605
Target Start/End: Complemental strand, 41514390 - 41513956
Alignment:
| Q |
171 |
acagggctgtgcttcaggagcccaaaaacattagtaactttactagaataggagagatgttcctagagaactgattgtagaccaactgtgtcatgattgt |
270 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
41514390 |
acagggctgtgcttcaggagcccaaaaacattagtaactttactagaataggagagatgttcctagagaactgattctagaccaattgtgtcatgattgt |
41514291 |
T |
|
| Q |
271 |
tggtcaaggctagaaggctcaagaaagtggttgagatgccagggtctagtggtaggtagttattcagtagtgtcgtgaacgagtagtgaatgagagtggt |
370 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41514290 |
tggtcaaggctagaaggctcaagaaagtggttgagatgccagggtctagtgggagctagttattcagtagtgtcgtgaacgagtagtgaatgagagtggt |
41514191 |
T |
|
| Q |
371 |
aatgtaggggaggttacttcgtacctagaaagagatggcgtgaatgatcattcttttgacctctttaggaacttatctcttggaaagtgttaagtatata |
470 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
41514190 |
aatgtaggggaggttacttcgtacctagaaagagatggtgtgaatgatcattcttttgacctctttaggaacttatctcttggaaagtgttgagtatata |
41514091 |
T |
|
| Q |
471 |
ttatatacttgctcttttctatttatgttgttttttcatccttctgaaaccatttattgtttatactttgaagcttactttgagtcttgcttcttaccta |
570 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41514090 |
ttatatacttgctcttttctatttatgttgttttttcatccttctgaaaccatttattatttatactttgaagcttactttgagtcttgcttcttaccta |
41513991 |
T |
|
| Q |
571 |
gaatgttattattattattttacactccatgtttc |
605 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |
|
|
| T |
41513990 |
gaatgttattattattattttacactccacgtttc |
41513956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 282 - 446
Target Start/End: Complemental strand, 41508041 - 41507873
Alignment:
| Q |
282 |
agaaggctcaagaaagtggttgagatgccagggtcta----gtggtaggtagttattcagtagtgtcgtgaacgagtagtgaatgagagtggtaatgtag |
377 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||||||| |||| || |||||||| ||||| ||| ||| ||||| |||||||||||||| ||| || |
|
|
| T |
41508041 |
agaaggctcaagaaagtggttgttatggcagggtctaatgggtgggagttagttatttagtagcatcgagaaagagtactgaatgagagtggtgatgcag |
41507942 |
T |
|
| Q |
378 |
gggaggttacttcgtacctagaaagagatggcgtgaatgatcattcttttgacctctttaggaacttat |
446 |
Q |
| |
|
|||||||||||| | | |||||| ||||| ||| ||||| || ||||| ||||||||||| ||||| |
|
|
| T |
41507941 |
gggaggttacttagaatttagaaacagatgttgtggatgattatccttttttcctctttaggagcttat |
41507873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 481 - 605
Target Start/End: Complemental strand, 33080801 - 33080693
Alignment:
| Q |
481 |
gctcttttctatttatgttgttttt-tcatccttctgaaaccatttattgtttatactttgaagcttactttgagtcttgcttcttacctagaatgttat |
579 |
Q |
| |
|
|||||||||||||| |||||||||| || | |||||||||||||||| |||||||||||||| ||||||||||||||||||| ||| |
|
|
| T |
33080801 |
gctcttttctatttttgttgtttttctctt--ttctgaaaccatttatagtttatactttgaa------------tcttgcttcttacctagaa---tat |
33080719 |
T |
|
| Q |
580 |
tattattattttacactccatgtttc |
605 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
33080718 |
tattattattttacactccatgtttc |
33080693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 290 - 389
Target Start/End: Complemental strand, 41517626 - 41517523
Alignment:
| Q |
290 |
caagaaagtggttgagatgccagggtctagtggtagg----tagttattcagtagtgtcgtgaacgagtagtgaatgagagtggtaatgtaggggaggtt |
385 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||| ||| |||||||| || || |||| ||| |||| |||||||||||||| ||| |||||||||| |
|
|
| T |
41517626 |
caagaaagtggttgttatggcagggtctagtgggagggagttagttatttagcagcgtcgagaaatagtactgaatgagagtggttatgcaggggaggtt |
41517527 |
T |
|
| Q |
386 |
actt |
389 |
Q |
| |
|
|||| |
|
|
| T |
41517526 |
actt |
41517523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 511 - 546
Target Start/End: Complemental strand, 41468479 - 41468444
Alignment:
| Q |
511 |
cttctgaaaccatttattgtttatactttgaagctt |
546 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| |
|
|
| T |
41468479 |
cttctgaaaccatttattgtttgtactttgaagctt |
41468444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 282 - 340
Target Start/End: Original strand, 2438645 - 2438703
Alignment:
| Q |
282 |
agaaggctcaagaaagtggttgagatgccagggtctagtggtaggtagttattcagtag |
340 |
Q |
| |
|
||||||||||| ||||||||||||||| |||||||| || | || |||||||||||||| |
|
|
| T |
2438645 |
agaaggctcaataaagtggttgagatggcagggtcttgtaggagttagttattcagtag |
2438703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University