View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11121_high_30 (Length: 382)
Name: NF11121_high_30
Description: NF11121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11121_high_30 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 368
Target Start/End: Complemental strand, 18238184 - 18237820
Alignment:
| Q |
1 |
tgtgctgcggctagtgtgcatccacaacctattgctgacccaatatggaggtaagaatgannnnnnnnnnnnnnnnnnacctatggctgttttggaatta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
18238184 |
tgtgctgcggctagtgtgcatccacaacctattgctgacccaatatggaggtaagaatgattttttttttttttt---acctatggctgttttggaatta |
18238088 |
T |
|
| Q |
101 |
atgatagaatatgtctaaagtttaattttcttggacaataggggatgtttgaaggtttcaaatattggaaaagtcattgaactaatgggacatttgtcta |
200 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18238087 |
atgatagaatatgtctgaagtttaattttcttggataataggggatgtttgaaggtttcaaacattggaaaagtcattgaactaatgggacatttgtcta |
18237988 |
T |
|
| Q |
201 |
ttttagcatgccctaaagttcatgaagaggctagatatctccctaatatgatttctgcaaacttccatcaaaaatcaactgtgtggcctgaaagtttcaa |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |
|
|
| T |
18237987 |
ctttagcatgccctaaagttcatgaagaggctagatatctccctaatatgatttctgcaaacttccttcaaaaatcaaccgtgtggcctgaaagtttcaa |
18237888 |
T |
|
| Q |
301 |
gaattctggtacgaataacttcagcattggaatttatttcctttctcctcagaatcgaaggtgattat |
368 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
18237887 |
gaattctggtacgaataacttcagcattggaatttatttcctttctcctcataatccaaggtgattat |
18237820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 181 - 244
Target Start/End: Complemental strand, 11788449 - 11788386
Alignment:
| Q |
181 |
actaatgggacatttgtctattttagcatgccctaaagttcatgaagaggctagatatctccct |
244 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||||||| | ||||||||| ||| || ||||| |
|
|
| T |
11788449 |
actaatgggacatttgtccacattagcatgccctaaagtacttgaagaggcaagacatatccct |
11788386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 181 - 225
Target Start/End: Complemental strand, 501512 - 501468
Alignment:
| Q |
181 |
actaatgggacatttgtctattttagcatgccctaaagttcatga |
225 |
Q |
| |
|
|||||| || |||||||| | |||||||||||||||||||||||| |
|
|
| T |
501512 |
actaattggccatttgtccaatttagcatgccctaaagttcatga |
501468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University