View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11121_high_35 (Length: 357)
Name: NF11121_high_35
Description: NF11121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11121_high_35 |
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Alignment Details
Target: chr5 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 39809592 - 39809877
Alignment:
| Q |
1 |
atacagaagatgggaaagagagcaaggacgaagggatgcaacagaggatttgtctgaagagttgtcagaaggagaaaagggagatggcattggggagata |
100 |
Q |
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| T |
39809592 |
atacagaagatgggaaagagagcaaggacgaagggatgcaacagaggatttgtctgaagagttgtcagagggagaaaagggagatggcattggggagata |
39809691 |
T |
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| Q |
101 |
atacaaattgagactcaacagaaaaaacttcagaggcatgcttctagcctggaaatatggtctgatgacaaaaaggaaaagaaactttatattatcctct |
200 |
Q |
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| T |
39809692 |
atacaaattgagactcaacagaaaaaacttcagaggcatgcttctagcctggaaatatggtctgatgacaaaaaggaaaagaaactttatattatcctct |
39809791 |
T |
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| Q |
201 |
taaggtatactttattcttagactcggataaacaatttaattaaatgcttaaagttatatcataagtgtttattgtacaagccctt |
286 |
Q |
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| T |
39809792 |
taaggtatactttattcttagactcggataaacaatttaattaaatgcttaaagttatatcataagtgtttattgtacaagccctt |
39809877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 285 - 357
Target Start/End: Original strand, 39809902 - 39809974
Alignment:
| Q |
285 |
tttcctataagttataagctatttgtgattgttatcatggcgagcgtaggaaaataagctgaaaacgatttat |
357 |
Q |
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| T |
39809902 |
tttcgtataagttatatgctatttgcgattgttatcatggcgagcttatgaaaataagctgaaaacgatttat |
39809974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 78
Target Start/End: Original strand, 15795950 - 15796025
Alignment:
| Q |
3 |
acagaagatgggaaagagagcaaggacgaagggatgcaacagaggatttgtctgaagagttgtcagaaggagaaaa |
78 |
Q |
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| T |
15795950 |
acagaagatgggagagagaacaaggacgcagagatgctacagaagacatgtcagaagacttgtcagaaggagaaaa |
15796025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 206
Target Start/End: Original strand, 15796103 - 15796153
Alignment:
| Q |
156 |
tatggtctgatgacaaaaaggaaaagaaactttatattatcctcttaaggt |
206 |
Q |
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| T |
15796103 |
tatggtctgatgataaaaatgaaaagaagctttatattgtcctcataaggt |
15796153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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