View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11121_high_37 (Length: 340)
Name: NF11121_high_37
Description: NF11121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11121_high_37 |
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| [»] scaffold0137 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 319; Significance: 1e-180; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 18 - 336
Target Start/End: Complemental strand, 46285358 - 46285040
Alignment:
| Q |
18 |
ataagggataatcaaggctcatctagctggtcctgcagaatccaaatatagcttaactcagattatgatcaatttggagcaatattaggaagagagacca |
117 |
Q |
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| T |
46285358 |
ataagggataatcaaggctcatctagctggtcctgcagaatccaaatatagcttaactcagattatgatcaatttggagcaatattaggaagagagacca |
46285259 |
T |
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| Q |
118 |
atgattattaattaaaatgctttgacagaaaaatgttctgaaaagggcggcttttatattaaaaacattttacctggacatcagaagtccaaagggtgag |
217 |
Q |
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| T |
46285258 |
atgattattaattaaaatgctttgacagaaaaatgttctgaaaagggcggcttttatattaaaaacattttacctggacatcagaagtccaaagggtgag |
46285159 |
T |
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| Q |
218 |
gttgtctctcaaaagttgcattataagtgtgctgtctttgtaggattcttctcccaatgtgtccagttcagcaattgcttcctcaaaagcctatccagaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46285158 |
gttgtctctcaaaagttgcattataagtgtgctgtctttgtaggattcttctcccaatgtgtccagttcagcaattgcttcctcaaaagcctatccagaa |
46285059 |
T |
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| Q |
318 |
ggaaaagaatattgtttca |
336 |
Q |
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||||||||||||||||||| |
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| T |
46285058 |
ggaaaagaatattgtttca |
46285040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 29 - 143
Target Start/End: Original strand, 3896608 - 3896722
Alignment:
| Q |
29 |
tcaaggctcatctagctggtcctgc-agaatccaaatatagc-ttaactcagattatgatcaa-tttggagcaatattaggaagagagaccaatgattat |
125 |
Q |
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| T |
3896608 |
tcaatgctcgtctagctggtcctgcaagaagccaaatatagctttaacttagattatgatcaactttgga-taatatta--taaagagatcaatgattat |
3896704 |
T |
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| Q |
126 |
taattaaaatgctttgac |
143 |
Q |
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|||| ||||||||||||| |
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| T |
3896705 |
taatcaaaatgctttgac |
3896722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 182 - 275
Target Start/End: Original strand, 3896741 - 3896834
Alignment:
| Q |
182 |
acattttacctggacatcagaagtccaaagggtgaggttgtctctcaaaagttgcattataagtgtgctgtctttgtaggattcttctcccaat |
275 |
Q |
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| T |
3896741 |
acattttaccatgtcatcaaaagtccagaggatgatgttgtttctcaaaagttgcatgcgaaccgtgctgtctttgtagtattcatctcccaat |
3896834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0137 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: scaffold0137
Description:
Target: scaffold0137; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 29 - 143
Target Start/End: Original strand, 4262 - 4376
Alignment:
| Q |
29 |
tcaaggctcatctagctggtcctgca-gaatccaaatatagc-ttaactcagattatgatcaatttggagcaatattaggaagagagaccaatgattatt |
126 |
Q |
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|||| |||| |||||||||||||||| ||| ||||||||||| |||||| ||||||||||||| |||| ||||||| | ||||||||||||||||| |
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| T |
4262 |
tcaatgctcgtctagctggtcctgcatgaagccaaatatagctttaacttagattatgatcaacttgggataatatta--taaagagaccaatgattatt |
4359 |
T |
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| Q |
127 |
aattaaaatgctttgac |
143 |
Q |
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||| ||||||||||||| |
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| T |
4360 |
aatcaaaatgctttgac |
4376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0137; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 275
Target Start/End: Original strand, 4395 - 4488
Alignment:
| Q |
182 |
acattttacctggacatcagaagtccaaagggtgaggttgtctctcaaaagttgcattataagtgtgctgtctttgtaggattcttctcccaat |
275 |
Q |
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|||||||||| | ||||| ||||||| ||||||| ||||| ||||||||||||||| || ||||||||||||||| |||| ||||||||| |
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| T |
4395 |
acattttaccgtgtcatcaaaagtccagagggtgatgttgtttctcaaaagttgcatgcgaaccgtgctgtctttgtagtattcatctcccaat |
4488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 310
Target Start/End: Complemental strand, 27126829 - 27126717
Alignment:
| Q |
198 |
tcagaagtccaaagggtgaggttgtctctcaaaagttgcattataagtgtgctgtctttgtaggattcttctcccaatgtgtccagttcagcaattgctt |
297 |
Q |
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||||| ||||||||||||||||| || | | ||||||||| || | ||||| || ||||| ||||| ||||||||||| || | ||||||||| || | |
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| T |
27126829 |
tcagaggtccaaagggtgaggttatcacggagaagttgcatgatcaaagtgctatccttgtatgattcctctcccaatgtatctaattcagcaatagcct |
27126730 |
T |
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| Q |
298 |
cctcaaaagccta |
310 |
Q |
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| T |
27126729 |
cgtcaaaagccta |
27126717 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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