View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11121_high_38 (Length: 336)
Name: NF11121_high_38
Description: NF11121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11121_high_38 |
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Alignment Details
Target: chr1 (Bit Score: 306; Significance: 1e-172; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 8 - 321
Target Start/End: Complemental strand, 49709648 - 49709335
Alignment:
| Q |
8 |
aagcagagaaaagcaacaactatcatactagtgcagtgcatttatgcgtttgcgcttctaggttgactgtattagtataccattggcacaataaaatctc |
107 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49709648 |
aagcagacaaaagcaacaactatcatactagtgcagtgcatttatgtgtttgcgcttctaggttgactgtattagtataccattggcacaataaaatctc |
49709549 |
T |
|
| Q |
108 |
tcgttgttgtcaagtgtacactgtcctctttgtttgtagtgacaatgtgcacattcctctgttatttttacttcagttaggatatcagccgttatgaaag |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49709548 |
tcgttgttgtcaagtgtacactgtcctctttgtttgtagtgacaatgtgcacattcctctgttatttttacttcagttaggatatcagccgttatgaaag |
49709449 |
T |
|
| Q |
208 |
tagaagggtcgttagcgtcagcaaaatctttagttggaagtgtgacatttgtgcaagctgtaaaagcactctgagacgtattatcagcatggctatgagg |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49709448 |
tagaagggtcgttagcgtcagcaaaatctttagttggaagtgtgacatttgtgcaagctgtaaaagcactctgagacgtattatcagcatggctatgagg |
49709349 |
T |
|
| Q |
308 |
ctggtagtagagat |
321 |
Q |
| |
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|||||||||||||| |
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| T |
49709348 |
ctggtagtagagat |
49709335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 8 - 321
Target Start/End: Complemental strand, 49666091 - 49665778
Alignment:
| Q |
8 |
aagcagagaaaagcaacaactatcatactagtgcagtgcatttatgcgtttgcgcttctaggttgactgtattagtataccattggcacaataaaatctc |
107 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49666091 |
aagcagacaaaagcaacaactatcatactagtgcagtgcatttatgtgtttgcgcttctaggttgactgtattagtataccattggcacaataaaatctc |
49665992 |
T |
|
| Q |
108 |
tcgttgttgtcaagtgtacactgtcctctttgtttgtagtgacaatgtgcacattcctctgttatttttacttcagttaggatatcagccgttatgaaag |
207 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49665991 |
tcgttgttgtcaagtgtacactgtcctctttgtttgtagtgacaatgtgcacattcctctgttatttttacttcagttaggatatcagccgttatgaaag |
49665892 |
T |
|
| Q |
208 |
tagaagggtcgttagcgtcagcaaaatctttagttggaagtgtgacatttgtgcaagctgtaaaagcactctgagacgtattatcagcatggctatgagg |
307 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49665891 |
tagaagggttgttagcgtcagcaaaatctttagttggaagtgtgacatttgtgcaagctgtaaaagcactctgagacgtattatcagcatggctatgagg |
49665792 |
T |
|
| Q |
308 |
ctggtagtagagat |
321 |
Q |
| |
|
|||||||||||||| |
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|
| T |
49665791 |
ctggtagtagagat |
49665778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 74 - 296
Target Start/End: Complemental strand, 49210723 - 49210501
Alignment:
| Q |
74 |
ctgtattagtataccattggcacaataaaatctctcgttgttgtcaagtgtacactgtcctctttgtttgtagtgacaatgtgcacattcctctgttatt |
173 |
Q |
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|||| ||||||||||||| ||||||||||| ||| | ||| | |||| | |||| ||||| |||| ||| ||||||||| ||||||||||| ||||| |
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|
| T |
49210723 |
ctgttttagtataccattagcacaataaaacctccccttgctatcaacttgacaccgtcctttttggttgaagtgacaatatgcacattccttggttatg |
49210624 |
T |
|
| Q |
174 |
tttacttcagttaggatatcagccgttatgaaagtagaagggtcgttagcgtcagcaaaatctttagttggaagtgtgacatttgtgcaagctgtaaaag |
273 |
Q |
| |
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| |||||||||| |||||||||| |||| ||||||| |||||||| |||||||||| || ||||||| ||||| ||||||||| ||||||||||||| |
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| T |
49210623 |
tgtacttcagtttggatatcagcagttacgaaagtaaaagggtcgctagcgtcagcgaagtctttagacggaagctggacatttgtacaagctgtaaaag |
49210524 |
T |
|
| Q |
274 |
cactctgagacgtattatcagca |
296 |
Q |
| |
|
|||| |||| | |||||||||| |
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|
| T |
49210523 |
cacttcgagatgcattatcagca |
49210501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 90 - 316
Target Start/End: Original strand, 49864278 - 49864504
Alignment:
| Q |
90 |
ttggcacaataaaatctctcgttgttgtcaagtgtacactgtcctctttgtttgtagtgacaatgtgcacattcctctgttatttttacttcagttagga |
189 |
Q |
| |
|
|||||||| | ||| ||| |||||||||||| | |||| |||||||||||||| ||||||||| |||||||| || ||||||||||||||||||||| |
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| T |
49864278 |
ttggcacagtgaaacctcccgttgttgtcaaattcacaccgtcctctttgtttgaagtgacaatttgcacatttttcagttatttttacttcagttaggg |
49864377 |
T |
|
| Q |
190 |
tatcagccgttatgaaagtagaagggtcgttagcgtcagcaaaatctttagttggaagtgtgacatttgtgcaagctgtaaaagcactctgagacgtatt |
289 |
Q |
| |
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||||| | |||||||||||| | ||||| ||||| ||||| | |||||| ||||||| ||||||||| ||| ||| |||| |||| |||||| ||| |
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| T |
49864378 |
tatcaacagttatgaaagtaaaggggtccttagcatcagcgaggtctttaattggaagcaggacatttgtacaatctgaaaaattactccgagacgcatt |
49864477 |
T |
|
| Q |
290 |
atcagcatggctatgaggctggtagta |
316 |
Q |
| |
|
|||||| | | | |||||||||||||| |
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|
| T |
49864478 |
atcagcgtagatgtgaggctggtagta |
49864504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 266
Target Start/End: Complemental strand, 18317816 - 18317741
Alignment:
| Q |
191 |
atcagccgttatgaaagtagaagggtcgttagcgtcagcaaaatctttagttggaagtgtgacatttgtgcaagct |
266 |
Q |
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||||||||||||||||||| ||||||||||||| ||||| | |||||| | ||||| |||||||||| |||||| |
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| T |
18317816 |
atcagccgttatgaaagtaaaagggtcgttagcatcagcgacgtctttaatcggaagcatgacatttgtacaagct |
18317741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 191 - 229
Target Start/End: Original strand, 41686039 - 41686077
Alignment:
| Q |
191 |
atcagccgttatgaaagtagaagggtcgttagcgtcagc |
229 |
Q |
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| T |
41686039 |
atcagccgttatgaaagtaaaagggtcgttagcatcagc |
41686077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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