View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11121_high_39 (Length: 331)

Name: NF11121_high_39
Description: NF11121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11121_high_39
NF11121_high_39
[»] chr1 (12 HSPs)
chr1 (13-321)||(1816036-1816344)
chr1 (14-321)||(1856700-1857007)
chr1 (89-308)||(1868308-1868527)
chr1 (89-308)||(1842699-1842918)
chr1 (103-317)||(9218860-9219074)
chr1 (92-254)||(9170766-9170928)
chr1 (92-317)||(9200333-9200558)
chr1 (92-314)||(9161940-9162162)
chr1 (92-256)||(9118348-9118512)
chr1 (92-212)||(9156028-9156148)
chr1 (92-266)||(9229734-9229908)
chr1 (286-314)||(9156222-9156250)
[»] chr7 (3 HSPs)
chr7 (154-321)||(37567642-37567809)
chr7 (35-159)||(37572119-37572243)
chr7 (135-179)||(30105892-30105936)
[»] chr3 (1 HSPs)
chr3 (97-176)||(40597787-40597866)


Alignment Details
Target: chr1 (Bit Score: 285; Significance: 1e-160; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 13 - 321
Target Start/End: Original strand, 1816036 - 1816344
Alignment:
Q  13 ccagctacctcaacagctatcctaagacgagttttccaagttagatcgttcgtcttaccttgtgtgcgaagaaattcagaaagagtaccattgctaacaa 112  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1816036 ccagctacctcaacagctatcctaagacgagttttccaagtaagatcgttcgtcttaccttgtgtgcgaagaaattcagaaagagtaccattgctaacaa 1816135  T
Q  113 actcataaaccaacaaaggaacttctgtttctagacaacaccctaagagtttgaccacattcctgtgatttatttgagagacaacatccacctcattaat 212  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  1816136 actcataaaccaacaaaggaacttctgtttctagacaacaccccaagagtttgaccacattcctgtgatttatttgagagacaacatccacctcgttaat 1816235  T
Q  213 gaattgttcaatttggctttcgtctattgttttggactttttgatggcaacaattctcttatcatcaagttcccctttgaaaactgtaccaaaacctcct 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  1816236 gaattgttcaatttggctttcgtctattgttttggactttttgatagccacaattctattatcatcaagttcccctttgaaaactgtaccaaaacctcct 1816335  T
Q  313 ctacctatg 321  Q
    |||||||||    
T  1816336 ctacctatg 1816344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 14 - 321
Target Start/End: Complemental strand, 1857007 - 1856700
Alignment:
Q  14 cagctacctcaacagctatcctaagacgagttttccaagttagatcgttcgtcttaccttgtgtgcgaagaaattcagaaagagtaccattgctaacaaa 113  Q
    ||||||||||  | |||||| |||||||||| ||||||||| |||| ||||||||||||| |||| ||| ||||||||||||||||||||||||||||||    
T  1857007 cagctacctctgcggctatcttaagacgagtcttccaagttggatcattcgtcttaccttttgtgtgaataaattcagaaagagtaccattgctaacaaa 1856908  T
Q  114 ctcataaaccaacaaaggaacttctgtttctagacaacaccctaagagtttgaccacattcctgtgatttatttgagagacaacatccacctcattaatg 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  1856907 ctcataaaccaacaaaggaacttctgtttctagacaacaccctaagagtttgaccacatttctgtgatttatttgagagacaacatccacctcattaatg 1856808  T
Q  214 aattgttcaatttggctttcgtctattgttttggactttttgatggcaacaattctcttatcatcaagttcccctttgaaaactgtaccaaaacctcctc 313  Q
    ||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||     
T  1856807 aattgttcaatttggcttttgtctattgttttagactttttgatagcaacaattctattatcatcaagttcccctttgtaaactgtaccaaaacctcctt 1856708  T
Q  314 tacctatg 321  Q
    ||||||||    
T  1856707 tacctatg 1856700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 89 - 308
Target Start/End: Complemental strand, 1868527 - 1868308
Alignment:
Q  89 cagaaagagtaccattgctaacaaactcataaaccaacaaaggaacttctgtttctagacaacaccctaagagtttgaccacattcctgtgatttatttg 188  Q
    ||||||| || |||||| ||||||| |||||||||||||||||||||||||| |||| ||||||||| ||||||||||| |||||||| |||||||||||    
T  1868527 cagaaagggtgccattggtaacaaattcataaaccaacaaaggaacttctgtctctaaacaacaccccaagagtttgacaacattcctatgatttatttg 1868428  T
Q  189 agagacaacatccacctcattaatgaattgttcaatttggctttcgtctattgttttggactttttgatggcaacaattctcttatcatcaagttcccct 288  Q
    ||||| |||| ||||||||||||||||||| || |||||||||   |||||| |||| || |||||||| ||||| ||||| |||||||| ||    |||    
T  1868427 agagagaacaaccacctcattaatgaattgatcgatttggcttctatctattatttttgattttttgatagcaacgattcttttatcatctagaagtcct 1868328  T
Q  289 ttgaaaactgtaccaaaacc 308  Q
    |||||||| |||||||||||    
T  1868327 ttgaaaacggtaccaaaacc 1868308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 89 - 308
Target Start/End: Complemental strand, 1842918 - 1842699
Alignment:
Q  89 cagaaagagtaccattgctaacaaactcataaaccaacaaaggaacttctgtttctagacaacaccctaagagtttgaccacattcctgtgatttatttg 188  Q
    ||||||| || |||||| ||||||| |||||||||||||||||||||||||| |||| ||||||||| ||||||||||| |||||||| |||||||||||    
T  1842918 cagaaagggtgccattggtaacaaattcataaaccaacaaaggaacttctgtctctaaacaacaccccaagagtttgacaacattcctatgatttatttg 1842819  T
Q  189 agagacaacatccacctcattaatgaattgttcaatttggctttcgtctattgttttggactttttgatggcaacaattctcttatcatcaagttcccct 288  Q
    ||||| || |   ||||||||||||||||| |  |||||||||   |||||| |||| || |||||||| ||||| ||||| |||||||| ||    |||    
T  1842818 agagagaataattacctcattaatgaattgattgatttggcttctatctattatttttgattttttgatagcaacgattcttttatcatctagaaatcct 1842719  T
Q  289 ttgaaaactgtaccaaaacc 308  Q
    ||| |||| |||||||||||    
T  1842718 ttgtaaacagtaccaaaacc 1842699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 103 - 317
Target Start/End: Original strand, 9218860 - 9219074
Alignment:
Q  103 ttgctaacaaactcataaaccaacaaaggaacttctgtttctagacaacaccctaagagtttgaccacattcctgtgatttatttgagagacaacatcca 202  Q
    ||||||||||| ||||| |||||| ||||||||||||| || | |||||||||||| |||||||| || ||||| ||||||||||| || | |||| | |    
T  9218860 ttgctaacaaattcatacaccaacgaaggaacttctgtctccaaacaacaccctaaaagtttgacaacgttcctatgatttatttgggacagaacaacta 9218959  T
Q  203 cctcattaatgaattgttcaatttggctttcgtctattgttttggactttttgatggcaacaattctcttatc-atcaagttcccctttgaaaactgtac 301  Q
    |||||||||||||||| || || ||  || |||||||| |||||||||||||||  || |||||| | |||||   |||  |  ||||||||||||||||    
T  9218960 cctcattaatgaattgctcgatctgatttgcgtctattattttggactttttgacagcgacaattttgttatcgggcaaaat-tcctttgaaaactgtac 9219058  T
Q  302 caaaacctcctctacc 317  Q
    ||||||||||||||||    
T  9219059 caaaacctcctctacc 9219074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 92 - 254
Target Start/End: Original strand, 9170766 - 9170928
Alignment:
Q  92 aaagagtaccattgctaacaaactcataaaccaacaaaggaacttctgtttctagacaacaccctaagagtttgaccacattcctgtgatttatttgaga 191  Q
    |||| ||||| ||||||||||| || || |||||  ||||||||||||| |||||||||||||||| ||||||||| |||||||| ||||||||||| |     
T  9170766 aaagtgtaccgttgctaacaaattcgtacaccaatgaaggaacttctgtctctagacaacaccctaggagtttgacaacattcctatgatttatttgggt 9170865  T
Q  192 gacaacatccacctcattaatgaattgttcaatttggctttcgtctattgttttggacttttt 254  Q
     | |||| | ||||||||||||||||| ||||||||  || |||| ||| ||||||| |||||    
T  9170866 cagaacaactacctcattaatgaattgctcaatttgatttgcgtcaattattttggatttttt 9170928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 92 - 317
Target Start/End: Original strand, 9200333 - 9200558
Alignment:
Q  92 aaagagtaccattgctaacaaactcataaaccaacaaaggaacttctgtttctagacaacaccctaagagtttgaccacattcctgtgatttatttgaga 191  Q
    |||| ||||| ||||||||||| || || || ||  ||||||||||||| ||||||||||| |||| ||||||||| |||||||| ||||||||||| |     
T  9200333 aaagtgtaccgttgctaacaaattcgtacactaatgaaggaacttctgtctctagacaacagcctaggagtttgacaacattcctatgatttatttgggt 9200432  T
Q  192 gacaacatccacctcattaatgaattgttcaatttggctttcgtctattgttttggactttttgatggcaacaattctcttatcatcaagttcccctttg 291  Q
     | |||| | ||||||||||||||||| ||||||||  || |||| ||| ||||||| ||||| |  || |||||| | ||||||   |   | ||||||    
T  9200433 cagaacaactacctcattaatgaattgctcaatttgatttgcgtcaattattttggatttttttacagcgacaattttgttatcaggtaaaactcctttg 9200532  T
Q  292 aaaactgtaccaaaacctcctctacc 317  Q
     |||||||||||||||||||||||||    
T  9200533 taaactgtaccaaaacctcctctacc 9200558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 92 - 314
Target Start/End: Original strand, 9161940 - 9162162
Alignment:
Q  92 aaagagtaccattgctaacaaactcataaaccaacaaaggaacttctgtttctagacaacaccctaagagtttgaccacattcctgtgatttatttgaga 191  Q
    |||| |||||||||||||| || ||||| |||||| ||||||||||||| |||| |||||| || ||||||||||| ||||| || ||||||||||| ||    
T  9161940 aaagtgtaccattgctaacgaattcatacaccaacgaaggaacttctgtctctaaacaacatcccaagagtttgacaacatttctatgatttatttggga 9162039  T
Q  192 gacaacatccacctcattaatgaattgttcaatttggctttcgtctattgttttggactttttgatggcaacaattctcttatcatcaagttcccctttg 291  Q
     | |||| | ||||| |||||||| || ||||||||  || | |||||| ||||||| |||||||  || || ||| | |||||    |   | ||||||    
T  9162040 cagaacaactacctcgttaatgaactgctcaatttgatttgcatctattattttggattttttgacagcgacgattttgttatctggtaagactcctttg 9162139  T
Q  292 aaaactgtaccaaaacctcctct 314  Q
    |||||||||||||||||||||||    
T  9162140 aaaactgtaccaaaacctcctct 9162162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 92 - 256
Target Start/End: Complemental strand, 9118512 - 9118348
Alignment:
Q  92 aaagagtaccattgctaacaaactcataaaccaacaaaggaacttctgtttctagacaacaccctaagagtttgaccacattcctgtgatttatttgaga 191  Q
    |||| ||||| | |||||| || ||||| |||||  ||||||||||||| |||| |||||||||||| |||||||| |||||||| ||||||||||| ||    
T  9118512 aaagtgtaccgtggctaacgaattcatagaccaaggaaggaacttctgtctctaaacaacaccctaaaagtttgacaacattcctatgatttatttggga 9118413  T
Q  192 gacaacatccacctcattaatgaattgttcaatttggctttcgtctattgttttggactttttga 256  Q
     | || | | ||||||||||||||||| || |||||  || |||||||| || ||||||||||||    
T  9118412 cagaataactacctcattaatgaattgctcgatttgatttgcgtctattattctggactttttga 9118348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 92 - 212
Target Start/End: Original strand, 9156028 - 9156148
Alignment:
Q  92 aaagagtaccattgctaacaaactcataaaccaacaaaggaacttctgtttctagacaacaccctaagagtttgaccacattcctgtgatttatttgaga 191  Q
    |||| |||||||||||||| || |||||||||||  ||||||||||||| |||| |||||| || ||||||||||| ||||| |||||||||||||| ||    
T  9156028 aaagtgtaccattgctaacgaattcataaaccaaggaaggaacttctgtctctaaacaacatcccaagagtttgacaacatttctgtgatttatttggga 9156127  T
Q  192 gacaacatccacctcattaat 212  Q
     |  ||| | |||||||||||    
T  9156128 taggacaactacctcattaat 9156148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 92 - 266
Target Start/End: Original strand, 9229734 - 9229908
Alignment:
Q  92 aaagagtaccattgctaacaaactcataaaccaacaaaggaacttctgtttctagacaacaccctaagagtttgaccacattcctgtgatttatttgaga 191  Q
    |||| ||||||||||||| ||| |||||||| |  |||||||||| ||| || | |||||| || ||||||||||| ||||| || ||||||||||| ||    
T  9229734 aaagggtaccattgctaataaattcataaactagtaaaggaacttgtgtctccaaacaacatcccaagagtttgacaacatttctatgatttatttggga 9229833  T
Q  192 gacaacatccacctcattaatgaattgttcaatttggctttcgtctattgttttggactttttgatggcaacaat 266  Q
     | |||| |||||||||| |||||||| || | |||| |  | || ||| |||||||||| ||||| ||||||||    
T  9229834 caaaacaaccacctcatttatgaattgctctacttgggtggcatccattattttggacttcttgattgcaacaat 9229908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 314
Target Start/End: Original strand, 9156222 - 9156250
Alignment:
Q  286 cctttgaaaactgtaccaaaacctcctct 314  Q
    |||||||||||||||||||||||||||||    
T  9156222 cctttgaaaactgtaccaaaacctcctct 9156250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 124; Significance: 9e-64; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 154 - 321
Target Start/End: Complemental strand, 37567809 - 37567642
Alignment:
Q  154 cctaagagtttgaccacattcctgtgatttatttgagagacaacatccacctcattaatgaattgttcaatttggctttcgtctattgttttggactttt 253  Q
    ||||||||||||||||||||||| |||||||||||||||||||  |||||||||||||||||||||||| |||||||||| |||||||||||||| ||||    
T  37567809 cctaagagtttgaccacattcctatgatttatttgagagacaatgtccacctcattaatgaattgttcattttggctttcatctattgttttggattttt 37567710  T
Q  254 tgatggcaacaattctcttatcatcaagttcccctttgaaaactgtaccaaaacctcctctacctatg 321  Q
    |||| |||||| |||| |||||||| |||| |||||||||||||||||||||||||||||||||||||    
T  37567709 tgatagcaacagttctattatcatctagtttccctttgaaaactgtaccaaaacctcctctacctatg 37567642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 35 - 159
Target Start/End: Complemental strand, 37572243 - 37572119
Alignment:
Q  35 taagacgagttttccaagttagatcgttcgtcttaccttgtgtgcgaagaaattcagaaagagtaccattgctaacaaactcataaaccaacaaaggaac 134  Q
    |||||||||||||| ||||| |||| ||| |||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||  ||||||    
T  37572243 taagacgagttttctaagttggatcattcatcttaccttgtgtgtgtataaattcagaaagagtaccattgctaacaaactcataaaccaaccgaggaac 37572144  T
Q  135 ttctgtttctagacaacaccctaag 159  Q
    |||||||||||||||||||||||||    
T  37572143 ttctgtttctagacaacaccctaag 37572119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 179
Target Start/End: Complemental strand, 30105936 - 30105892
Alignment:
Q  135 ttctgtttctagacaacaccctaagagtttgaccacattcctgtg 179  Q
    ||||||||| |||||||| |||||||||||||| | |||||||||    
T  30105936 ttctgtttcaagacaacagcctaagagtttgacaatattcctgtg 30105892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 97 - 176
Target Start/End: Complemental strand, 40597866 - 40597787
Alignment:
Q  97 gtaccattgctaacaaactcataaaccaacaaaggaacttctgtttctagacaacaccctaagagtttgaccacattcct 176  Q
    |||||||||  || ||| |||||||| | ||| |||||||||||||||| |||||| ||||  ||||| |||||||||||    
T  40597866 gtaccattgggaataaattcataaacaagcaatggaacttctgtttctaaacaacaacctacaagttttaccacattcct 40597787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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