View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11121_high_4 (Length: 615)

Name: NF11121_high_4
Description: NF11121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11121_high_4
NF11121_high_4
[»] chr1 (2 HSPs)
chr1 (71-347)||(42298842-42299121)
chr1 (449-605)||(42299225-42299382)
[»] chr8 (1 HSPs)
chr8 (455-490)||(9048361-9048396)
[»] chr6 (1 HSPs)
chr6 (451-483)||(2886614-2886646)
[»] chr5 (1 HSPs)
chr5 (451-483)||(36548421-36548453)
[»] chr3 (1 HSPs)
chr3 (449-481)||(20893281-20893313)


Alignment Details
Target: chr1 (Bit Score: 184; Significance: 3e-99; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 71 - 347
Target Start/End: Original strand, 42298842 - 42299121
Alignment:
Q  71 taacatcattctttgattatttttgtagtgaaacaatgttggttaaattgatgtgtacnnnnnnn-gtaaaaaataatcgacgtatttttaaatgagatt 169  Q
    |||||||||||| | ||||||||||||| |||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||    
T  42298842 taacatcattctctaattatttttgtagggaaacaatgttggttaaattgatgtgtacttttttttgtaaaaaataatcgacgtatttttaaatgagatt 42298941  T
Q  170 tacatgtagagagagacagctgtagacatagtagtagaacaattaaaatttaaaagatcactttacaaattgcaccaagtggtcctctaaaaaagatcac 269  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  42298942 tacatgtagagagagacagcggtagacatagtagtagaacaattaaaatttaaaagaccactttacaaattgcaccaagtggtcctctaaaaaagatcac 42299041  T
Q  270 cgacagttgcttgagtttcccttc--atattttaaagcaatgatatttgaataattatttgatacaataatttttgacaa 347  Q
    |||||||||||| | ||| |||||  |||||||| |||||||||||||||| ||||||||  ||||| | ||||||||||    
T  42299042 cgacagttgcttcactttaccttcatatattttagagcaatgatatttgaacaattatttagtacaacattttttgacaa 42299121  T

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Target: chr1; HSP #2
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 449 - 605
Target Start/End: Original strand, 42299225 - 42299382
Alignment:
Q  449 tatcacaaaatggttatacaaatattatttctctatattttagacacaggctaatcattagtt----tgtgtnnnnnnnnnnnncaataatattattttg 544  Q
    ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||    |||||            ||||||||||||||||    
T  42299225 tatcacaaaatggttgtacaaatattatttctccatattttagacacaggctaatcattaattaatttgtgtaaaaaaaaa---caataatattattttg 42299321  T
Q  545 acaacattattcaacaccttatctttctttcaaaaaacattattcaacaccttatgttcat 605  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42299322 acaacattattcaacaccttatctttctttcaaaaaacattattcaacaccttatgttcat 42299382  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 455 - 490
Target Start/End: Original strand, 9048361 - 9048396
Alignment:
Q  455 aaaatggttatacaaatattatttctctatatttta 490  Q
    ||||||||||||||||||| ||||||||||||||||    
T  9048361 aaaatggttatacaaatatcatttctctatatttta 9048396  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 451 - 483
Target Start/End: Complemental strand, 2886646 - 2886614
Alignment:
Q  451 tcacaaaatggttatacaaatattatttctcta 483  Q
    ||||||||||||||||||||||| |||||||||    
T  2886646 tcacaaaatggttatacaaatatcatttctcta 2886614  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 451 - 483
Target Start/End: Original strand, 36548421 - 36548453
Alignment:
Q  451 tcacaaaatggttatacaaatattatttctcta 483  Q
    ||||||||||||||||||||||| |||||||||    
T  36548421 tcacaaaatggttatacaaatatcatttctcta 36548453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 449 - 481
Target Start/End: Original strand, 20893281 - 20893313
Alignment:
Q  449 tatcacaaaatggttatacaaatattatttctc 481  Q
    ||||||||||||||| |||||||||||||||||    
T  20893281 tatcacaaaatggttgtacaaatattatttctc 20893313  T

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