View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11121_high_40 (Length: 327)
Name: NF11121_high_40
Description: NF11121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11121_high_40 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 13 - 327
Target Start/End: Original strand, 27442593 - 27442901
Alignment:
| Q |
13 |
cagaggaaacattgctaataccgaaagtctaacacagaaaaattaaattacacagcttcaatatgtttttattcaacttcatggacaaaaataatttata |
112 |
Q |
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| T |
27442593 |
cagaggaaacattgctaataccgaaagtctaacacagaaaaattaaattacacaacttcaataagttt--attcaacttcatggacaaaaataatttata |
27442690 |
T |
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| Q |
113 |
aaagaacaatggataccaaattttgtccctcgcaaaccaatcatccaatccttgacaaatatacacatattaatcccccagatttgtcatatctttgata |
212 |
Q |
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| T |
27442691 |
aaagaacaatggataccaaattttgtccctcgcaaaccaatcatccaatccttgacaaatatacacatattaatcccccacatttgtcatatctttgata |
27442790 |
T |
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| Q |
213 |
aattaattggtaa-tcattgtaatagatagactaattttagtcagataaaaaattgtcaagaactgattttgtcatgaaccagatggacacacgaaaata |
311 |
Q |
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| T |
27442791 |
aattaattggtaactcattgtaatagagagac-----ttagtgagataaaaaattgtcaagaactgattttgtcatgaaccagatggactcacgaaaata |
27442885 |
T |
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| Q |
312 |
ttgttagaaattaaat |
327 |
Q |
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| T |
27442886 |
ttgttagagattaaat |
27442901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 40 - 281
Target Start/End: Complemental strand, 27434007 - 27433766
Alignment:
| Q |
40 |
tctaacacagaaaaattaaattacacagcttcaatatgtttttattcaacttcatggacaaaaataatttataaaagaacaatggataccaaattttgtc |
139 |
Q |
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| T |
27434007 |
tctaacacggaaaaattaaactacacaacttcaataagttt--attcaacttcatggacaaaaataatttatagaagatcaatggagaccaaattttgtc |
27433910 |
T |
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| Q |
140 |
cctcgcaaaccaatcatccaatccttgacaaatatacacatattaatccc-ccagatttgtcatatctttgataaattaattggtaa-tcattgtaatag |
237 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||| | | || ||||||||| ||||||||||| | ||| ||||| |||||| |
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| T |
27433909 |
cctcgcaaaccaatcatccaatccttgactaatatacacatattaatccctgaacaattttcatatcttagataaattaatcgttaactcattataatag |
27433810 |
T |
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| Q |
238 |
atagactaattttagtcagataaaaaattgtcaagaactgattt |
281 |
Q |
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| T |
27433809 |
agagactaatttgtgtcaaatataaaaatgtcaggaactgattt |
27433766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 28 - 117
Target Start/End: Complemental strand, 27434138 - 27434051
Alignment:
| Q |
28 |
taataccgaaagtctaacacagaaaaattaaattacacagcttcaatatgtttttattcaacttcatggacaaaaataatttataaaaga |
117 |
Q |
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| T |
27434138 |
taataccaaaagtctaacacggaaaaattaaattacacaacttcaata--aattcattcaacttcacgggcaacaataaattataaaaga |
27434051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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