View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11121_high_43 (Length: 321)

Name: NF11121_high_43
Description: NF11121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11121_high_43
NF11121_high_43
[»] chr8 (4 HSPs)
chr8 (1-297)||(10190684-10190963)
chr8 (201-264)||(411408-411470)
chr8 (203-264)||(18191035-18191095)
chr8 (203-260)||(18194711-18194767)
[»] chr5 (2 HSPs)
chr5 (202-299)||(35276848-35276945)
chr5 (136-173)||(19397611-19397648)
[»] chr3 (3 HSPs)
chr3 (203-299)||(32372447-32372543)
chr3 (203-299)||(32366744-32366840)
chr3 (204-238)||(8124474-8124508)
[»] chr6 (2 HSPs)
chr6 (203-299)||(21461927-21462024)
chr6 (202-299)||(17372056-17372148)
[»] chr7 (2 HSPs)
chr7 (202-264)||(5113465-5113527)
chr7 (203-299)||(3952613-3952706)
[»] chr4 (1 HSPs)
chr4 (203-264)||(26078865-26078925)
[»] chr1 (2 HSPs)
chr1 (203-264)||(26075285-26075349)
chr1 (203-264)||(4957962-4958022)
[»] chr2 (1 HSPs)
chr2 (203-264)||(12392053-12392112)


Alignment Details
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 10190684 - 10190963
Alignment:
Q  1 tgccgctgtttcttccttcttctatgacggctacaatcaatataattatacatgtgcagttttgtgacagtggggagnnnnnnngaacaaacaaagaagg 100  Q
    ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||        | | ||||||||||||    
T  10190684 tgccgctgtttcttccttcttctatgacgtctacagtcaatataattatacatgtggagttttgtgacagtggggaaaaaaaaaggataaacaaagaagg 10190783  T
Q  101 gccaatttgataaattagtcgataatgattaacaacttatagttgatagtagataaactaatagattgaatttgcggtgtttgaaaaaatagcggttgaa 200  Q
    ||||||||||||||||||||||||                 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  10190784 gccaatttgataaattagtcgata-----------------gttgatagtagataaactaatagattgaatttgcagtgtttgaaaaaatagcggttgaa 10190866  T
Q  201 tttattagtttgtgtgttttaatccataatcatgattaacaaatgcttaagagtttagtttgttttgtttggataagtttgttagaaagttacaaga 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  10190867 tttattagtttgtgtgttttaatccataatcatgattaacaaatgcttaagagtttagtttgttttgtttggataagtttgttaggaagttacaaga 10190963  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 201 - 264
Target Start/End: Original strand, 411408 - 411470
Alignment:
Q  201 tttattagtttgtgtgttttaatccataatcatgattaacaaatgcttaagagtttagtttgtt 264  Q
    ||||| |||||| |||||| |||||||||||||| ||||||||  |||||||||||||||||||    
T  411408 tttatcagtttgcgtgttt-aatccataatcatgcttaacaaacacttaagagtttagtttgtt 411470  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 203 - 264
Target Start/End: Original strand, 18191035 - 18191095
Alignment:
Q  203 tattagtttgtgtgttttaatccataatcatgattaacaaatgcttaagagtttagtttgtt 264  Q
    ||||||||||||||||| |||||||||| ||| |||| |||  |||||||||||||||||||    
T  18191035 tattagtttgtgtgttt-aatccataatgatgcttaagaaacacttaagagtttagtttgtt 18191095  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 260
Target Start/End: Original strand, 18194711 - 18194767
Alignment:
Q  203 tattagtttgtgtgttttaatccataatcatgattaacaaatgcttaagagtttagtt 260  Q
    |||||||||||||| |||||| |||||||||| ||||||||  ||||||| |||||||    
T  18194711 tattagtttgtgtg-tttaatacataatcatgcttaacaaacacttaagattttagtt 18194767  T

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Target: chr5 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 202 - 299
Target Start/End: Complemental strand, 35276945 - 35276848
Alignment:
Q  202 ttattagtttgtgtgttttaatccataatcatgattaacaaatgcttaagagtttagtttgttttgtttggataagtttgttagaaagttacaagaga 299  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  35276945 ttattagtttgtatgttttaatccataatcatgattaacaaatgcttaagagtttagtttgttttgtttggataagtttgttaggaagttacaagaga 35276848  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 173
Target Start/End: Complemental strand, 19397648 - 19397611
Alignment:
Q  136 cttatagttgatagtagataaactaatagattgaattt 173  Q
    |||||| |||||||||||||||||||| ||||||||||    
T  19397648 cttataattgatagtagataaactaattgattgaattt 19397611  T

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Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 203 - 299
Target Start/End: Complemental strand, 32372543 - 32372447
Alignment:
Q  203 tattagtttgtgtgttttaatccataatcatgattaacaaatgcttaagagtttagtttgttttgtttggataagtttgttagaaagttacaagaga 299  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||| |||||||  ||||||||||||    
T  32372543 tattagtttgtgtgttttaatccataatcatgattaacaagtgcttaagactttagtttattttgtttggataagcttgttaggtagttacaagaga 32372447  T

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Target: chr3; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 203 - 299
Target Start/End: Complemental strand, 32366840 - 32366744
Alignment:
Q  203 tattagtttgtgtgttttaatccataatcatgattaacaaatgcttaagagtttagtttgttttgtttggataagtttgttagaaagttacaagaga 299  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||||||| | |||||||||||||||||||||| |||||||  ||||||||||||    
T  32366840 tattagtttgtgtgttttaatccataatcatgattagcaagtgcttaagactgtagtttgttttgtttggataagcttgttaggtagttacaagaga 32366744  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 238
Target Start/End: Complemental strand, 8124508 - 8124474
Alignment:
Q  204 attagtttgtgtgttttaatccataatcatgatta 238  Q
    |||||||||||||||||||||||||||| ||||||    
T  8124508 attagtttgtgtgttttaatccataatcttgatta 8124474  T

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Target: chr6 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 203 - 299
Target Start/End: Original strand, 21461927 - 21462024
Alignment:
Q  203 tattagtttgtgtgttttaatccataatcatgattaacaaatgcttaagagtttagtttgttttgtttggataagtttg-ttagaaagttacaagaga 299  Q
    |||||||||||||||||||||||||||||||||||||||||  ||||| |||||||||||||   |||||||||| ||| ||||  ||||||||||||    
T  21461927 tattagtttgtgtgttttaatccataatcatgattaacaaacacttaatagtttagtttgttacttttggataagcttgattagttagttacaagaga 21462024  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 202 - 299
Target Start/End: Complemental strand, 17372148 - 17372056
Alignment:
Q  202 ttattagtttgtgtgttttaatccataatcatgattaacaaatgcttaagagtttagtttgttttgtttggataagtttgttagaaagttacaagaga 299  Q
    ||||||||||||||   |||||||||||||||| |||  || || |||||||||||||||  |||  ||||||||||||||||||  |||||||||||    
T  17372148 ttattagtttgtgt---ttaatccataatcatgtttagaaagtgattaagagtttagtttagttt--ttggataagtttgttagattgttacaagaga 17372056  T

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Target: chr7 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 202 - 264
Target Start/End: Original strand, 5113465 - 5113527
Alignment:
Q  202 ttattagtttgtgtgttttaatccataatcatgattaacaaatgcttaagagtttagtttgtt 264  Q
    ||||||||||||||||||||||||||||||||| ||||||||  |||||||||||| ||||||    
T  5113465 ttattagtttgtgtgttttaatccataatcatgcttaacaaacacttaagagtttaatttgtt 5113527  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 203 - 299
Target Start/End: Complemental strand, 3952706 - 3952613
Alignment:
Q  203 tattagtttgtgtgttttaatccataatcatgattaacaaatgcttaagagtttagtttgttttgtttggataagtttgttagaaagttacaagaga 299  Q
    ||||||||||||| |||||||||||||||||| ||| ||| || ||||||||||||||| |||  ||||||||||||||| ||   |||||||||||    
T  3952706 tattagtttgtgt-ttttaatccataatcatgtttagcaagtgattaagagtttagtttattt--tttggataagtttgtcaggttgttacaagaga 3952613  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 203 - 264
Target Start/End: Original strand, 26078865 - 26078925
Alignment:
Q  203 tattagtttgtgtgttttaatccataatcatgattaacaaatgcttaagagtttagtttgtt 264  Q
    ||||||||||||||||| |||||||||||||| ||||||||  |||||||||||||||||||    
T  26078865 tattagtttgtgtgttt-aatccataatcatgcttaacaaacacttaagagtttagtttgtt 26078925  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 264
Target Start/End: Complemental strand, 26075349 - 26075285
Alignment:
Q  203 tattagtttgtgtgttttaatccataatcatgattaacaaatgctt---aagagtttagtttgtt 264  Q
    |||||||||| ||||||||||||||||||||| ||||||||  |||   ||||||||||||||||    
T  26075349 tattagtttgcgtgttttaatccataatcatgcttaacaaacacttaagaagagtttagtttgtt 26075285  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 264
Target Start/End: Complemental strand, 4958022 - 4957962
Alignment:
Q  203 tattagtttgtgtgttttaatccataatcatgattaacaaatgcttaagagtttagtttgtt 264  Q
    ||||||||||||||||| || | ||||| ||| ||||||||  |||||||||||||||||||    
T  4958022 tattagtttgtgtgttt-aaccaataattatgcttaacaaacacttaagagtttagtttgtt 4957962  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 203 - 264
Target Start/End: Original strand, 12392053 - 12392112
Alignment:
Q  203 tattagtttgtgtgttttaatccataatcatgattaacaaatgcttaagagtttagtttgtt 264  Q
    ||||||||||||||||| |||||||| ||||| ||||||||  |||||||||||||||||||    
T  12392053 tattagtttgtgtgttt-aatccata-tcatgcttaacaaacacttaagagtttagtttgtt 12392112  T

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