View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11121_high_44 (Length: 320)

Name: NF11121_high_44
Description: NF11121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11121_high_44
NF11121_high_44
[»] chr4 (1 HSPs)
chr4 (10-304)||(37668998-37669292)


Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 10 - 304
Target Start/End: Original strand, 37668998 - 37669292
Alignment:
Q  10 catcagaaacagaataatgttgtctacttcaatggaagaattatataattgcatacctcgtaaaaccaaagagctgcaaaatgttattcatggttggaaa 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37668998 catcagaaacagaataatgttgtctacttcaatggaagaattatataattgcatacctcgtaaaaccaaagagctgcaaaatgttattcatggttggaaa 37669097  T
Q  110 agttataagcaaagnnnnnnnaagttcttttttacttatgcaagatttaataattgattaattatataaataatgtgggggcttctttggacccaatcaa 209  Q
    ||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37669098 agttataagcaaagtttttttaagttcttttttacttatgcaagatttaataattgattaattatataaataatgtgggggcttctttggacccaatcaa 37669197  T
Q  210 atcagttaaactcattcacttgattgcttagttccatgtggaatgtatgtgcagttcccactgtggtactcctactaatctgttgattacaaagc 304  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37669198 atcagttaaactcattcactttattgcttagttccatgtggaatgtatgtgcagttcccactgtggtactcctactaatctgttgattacaaagc 37669292  T

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