View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11121_high_46 (Length: 300)
Name: NF11121_high_46
Description: NF11121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11121_high_46 |
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Alignment Details
Target: chr7 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 28889374 - 28889654
Alignment:
| Q |
1 |
attggaaacttaagcattgatgaaggtgttgaaactcctttaatgttggcactatggtcaaataatggtccttctggttgtttctttaataagggtgaag |
100 |
Q |
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| T |
28889374 |
attggaaacttaagcattgatgaaggtgttgaaactcctttaatgttggcactatggtcaaataatggtccttctggttgtttctttaataagggtgaag |
28889473 |
T |
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| Q |
101 |
taatatccttttgatcattattatcctaatagtgttcttctattctagaaatgaagtgacacccttttgatcaaaagtttatgttatgtatccaagagaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28889474 |
taatatccttttgatcattattatcctaatagtgttcttatattctagaaatgaagtgacacccttttgatcaaaagtttatgttatgtatccaagagaa |
28889573 |
T |
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| Q |
201 |
tgaataataggccatattcatgttaggaaatcaagtttgaacctagcacaacaaaaataaaatggcacattgatgggaaca |
281 |
Q |
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| T |
28889574 |
tgaataataggccatattcatgttaggaaatcaagtttgaacctagcacaacaaaaataaaatggcacattgatgggaaca |
28889654 |
T |
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Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 36017549 - 36017837
Alignment:
| Q |
1 |
attggaaacttaagcattgatgaaggtgttgaaactcctttaatgttggcactatggtcaaataatggtccttctggttgtttctttaataagggtgaag |
100 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
36017549 |
attggaaatttaagcattgatgaaggtgttgaaactcctttaatgttggcactattgtcaaataatggtccttctggttgtttctttactaagggtgaag |
36017648 |
T |
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| Q |
101 |
taatatccttttgatcatta--------ttatcctaatagtgttcttctattctagaaatgaagtgacacccttttgatcaaaagtttatgttatgtatc |
192 |
Q |
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||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |
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| T |
36017649 |
taatacccttttgatcattatttgattattatcctaatagtgttcttctattctagaaatgaagtgacacccttttgatcaaaggtatatgttatgtatt |
36017748 |
T |
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| Q |
193 |
caagagaatgaataataggccatattcatgttaggaaatcaagtttgaacctagcacaacaaaaataaaatggcacattgatgggaaca |
281 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||||| |
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| T |
36017749 |
caagagaatgaataataggccatattcatgttaggaaatcaaatttgaacctagcacaagaaaaataaagtggcacattgatgggaaca |
36017837 |
T |
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