View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11121_high_47 (Length: 300)
Name: NF11121_high_47
Description: NF11121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11121_high_47 |
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Alignment Details
Target: chr6 (Bit Score: 84; Significance: 6e-40; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 171 - 254
Target Start/End: Complemental strand, 9577205 - 9577122
Alignment:
| Q |
171 |
gacaactagaagtaaaattaaagaataaaatggatagaagaaattgaagttgttccacacacataccaacttggccaagggaga |
254 |
Q |
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| T |
9577205 |
gacaactagaagtaaaattaaagaataaaatggatagaagaaattgaagttgttccacacacataccaacttggccaagggaga |
9577122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 9577366 - 9577314
Alignment:
| Q |
1 |
aggggttagaaatttaaaaccttaatataactaaacgtttgaacataacataa |
53 |
Q |
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| T |
9577366 |
aggggttagaaatttaaaaccttaatataactaaacgtttgaacataacataa |
9577314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 171 - 254
Target Start/End: Complemental strand, 9573353 - 9573267
Alignment:
| Q |
171 |
gacaactagaagtaaaattaaaga-ataaaatggatagaagaaattgaagttgtt--ccacacacataccaacttggccaagggaga |
254 |
Q |
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| T |
9573353 |
gacaactaaaagtagaatgaaagagataatatggatagaagaaattgaagttattcgctacacatatatcaacttggccgagggaga |
9573267 |
T |
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