View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11121_high_5 (Length: 589)
Name: NF11121_high_5
Description: NF11121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11121_high_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 503; Significance: 0; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 17 - 584
Target Start/End: Complemental strand, 33006363 - 33005795
Alignment:
| Q |
17 |
agttagtgtgagccagtctagcattaaactctnnnnnnntgtcttagatctataacaatatatataatttaaatgagcaacttcataaaccataaaccaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33006363 |
agttagtgtgagccagtctagcattaaactctaaaaaaatgtcttagatctataacaatatatataatttaaatgagcaacttcataaaccataaaccaa |
33006264 |
T |
|
| Q |
117 |
atcactgatctatagttagcaattctctctccaattccattc-atggccgaaacaaaaccaactagtcatatagtagtaacatcaatccctctgtttagc |
215 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33006263 |
atcactgatctatagttagcaactctctctccaattccattccatggccgaaacaaaaccaactagtcatatagtagtaacatcaatccctctgtttagc |
33006164 |
T |
|
| Q |
216 |
catgaatcttctgtaattgagttctgcaagagactcattcaagtccataaccacttccaaatcacttgcatcttccccaccattgatgcacctatcccag |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33006163 |
catgaatcttctgtaattgagttctgcaagagactcattcaagtccataaccacttccaaatcacttgcatcttccccaccattgatgcacctatcccag |
33006064 |
T |
|
| Q |
316 |
ccaccctcaaattacttgaatctcttccttcaaccatacactgcactttcctccctccaatnnnnnnncaagacctaccacaagaagttaccatgcaact |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
33006063 |
ccaccctcaaattacttgaatctcttccttcaaccatacactgcactttcctccctccaataaaaaaacaagacctaccacaagaagttaccatgcaact |
33005964 |
T |
|
| Q |
416 |
tgaacttggtgttactaaatccatgccatcttttcgcgaatcgttgagtttgctttgttcaatttcaaccacaccggttgtagcaatagttgttgatcct |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33005963 |
tgaacttggtgttactaaatccatgccatcttttcgcgaatcgttgagtttgctttgttcaacttcaaccacaccggttgtagcaatagttgttgatcct |
33005864 |
T |
|
| Q |
516 |
tttgcaaaccaagcattagaaatagcgaaagagttcaacatcttatctttcatgtacttctctgcttct |
584 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
33005863 |
tttgcaaaccaagcattagaaatagcgaaagagttcaacatcttatctttcatgtacttccctgtttct |
33005795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 182 - 575
Target Start/End: Complemental strand, 3778970 - 3778574
Alignment:
| Q |
182 |
tcatatagtagtaacatcaatccctctgtttagccatgaatcttctgtaattgagttctgcaagagactcattcaagtccataaccacttccaaatcact |
281 |
Q |
| |
|
||||||||||||||| ||||| ||| |||||||||| || |||| | |||||||| ||||||||||| ||||| ||||| ||||| | || ||||| |
|
|
| T |
3778970 |
tcatatagtagtaacttcaattcctgtgtttagccaccaaagttctattattgagttttgcaagagactaattcatctccatcaccacattcatgtcact |
3778871 |
T |
|
| Q |
282 |
tgcatcttccccaccattgatgcacctatcccagccaccctcaaattacttgaatctcttccttcaaccatacactgcactttcctccctccaatnnnnn |
381 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
3778870 |
tgcatcttccccaccattgatgcacctatccctgccaccctcaaattacttgagtctcttccttcatccataaactgcactttcctccctccaataaaca |
3778771 |
T |
|
| Q |
382 |
nncaagacctaccacaagaagttaccatgcaacttgaacttggtgttactaaatccatgccatcttttcgcgaatcgttgagtttgctttgttcaatttc |
481 |
Q |
| |
|
|||||| | ||||| || ||| | || || ||||||| | || | |||||||||||||| |||| |||||||| || || ||||||| ||| |
|
|
| T |
3778770 |
aacaagacttgccacacgatgttgtcttggaaattgaactcgcggtggttcaatccatgccatctcttcgtagctcgttgaggttactgtgttcaacttc |
3778671 |
T |
|
| Q |
482 |
aac---cacaccggttgtagcaatagttgttgatccttttgcaaaccaagcattagaaatagcgaaagagttcaacatcttatctttcatgtacttc |
575 |
Q |
| |
|
||| ||||||||| ||| | ||||||||||||||||||| || |||||||||||||| ||||| || ||| ||||||||||| | |||||| |
|
|
| T |
3778670 |
aacatgcacaccggtatcagctttggttgttgatccttttgcaagtcatgcattagaaatagcaaaagacttaaacctcttatctttcgtatacttc |
3778574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 198 - 565
Target Start/End: Original strand, 3706902 - 3707272
Alignment:
| Q |
198 |
tcaatccctctgtttagccatgaatcttctgtaattgagttctgcaagagactcattcaagtccataaccacttccaaatcacttgcatcttccccacca |
297 |
Q |
| |
|
||||||||||| ||||||||| || |||| | |||||||| ||||||||||| ||||| ||||| ||||| | || ||||||||||||||||||||| |
|
|
| T |
3706902 |
tcaatccctctatttagccatcaaagttctattattgagttttgcaagagactaattcatctccatcaccacattcatgtcacttgcatcttccccacca |
3707001 |
T |
|
| Q |
298 |
ttgatgcacctatcccagccaccctcaaattacttgaatctcttccttcaaccatacactgcactttcctccctccaatnnnnnnncaagacctaccaca |
397 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| |||||||||||| ||||| ||||| ||||||||||||||| | |||| | ||||| |
|
|
| T |
3707002 |
ttgatgcacctatccctgccaccctcaaattacttgagtctcttccttcatccataagctgcagtttcctccctccaataaacaaactagacttcccaca |
3707101 |
T |
|
| Q |
398 |
agaagttaccatgcaacttgaacttggtgttactaaatccatgccatcttttcgcgaatcgttgagtttgctttgttcaatttcaac---cacaccggtt |
494 |
Q |
| |
|
|| ||| |||| || ||||||| | || | |||||||||||||| ||||| | |||||||| || || ||||||| |||||| |||||| || |
|
|
| T |
3707102 |
cgatgttggcatggaaattgaactcgcggtggttcaatccatgccatctcttcgcaactcgttgaggttactgtgttcaacttcaacatgcacaccagtg |
3707201 |
T |
|
| Q |
495 |
gtagcaatagttgttgatccttttgcaaaccaagcattagaaatagcgaaagagttcaacatcttatcttt |
565 |
Q |
| |
|
|||| | ||||||||||||||||||| ||||||||||||||||| ||||| || ||| |||||||||| |
|
|
| T |
3707202 |
tcagcattggttgttgatccttttgcaagtcaagcattagaaatagctaaagacttgaacctcttatcttt |
3707272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 182 - 374
Target Start/End: Original strand, 3700205 - 3700397
Alignment:
| Q |
182 |
tcatatagtagtaacatcaatccctctgtttagccatgaatcttctgtaattgagttctgcaagagactcattcaagtccataaccacttccaaatcact |
281 |
Q |
| |
|
|||||||| ||||| ||| ||||||| || ||||| |||| || |||||||||| ||||||||||||||||| ||||||| || | || |||||| |
|
|
| T |
3700205 |
tcatatagcagtaatttcagtccctctattcagccaccaatcctccataattgagttatgcaagagactcattcatctccataaatacattcatatcact |
3700304 |
T |
|
| Q |
282 |
tgcatcttccccaccattgatgcacctatcccagccaccctcaaattacttgaatctcttccttcaaccatacactgcactttcctccctcca |
374 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||| |
|
|
| T |
3700305 |
tgcatcttccccactattgatgcacctatccctgccaccctcaaattacttgaatctcttccttcatcaataaactgcactttcctccctcca |
3700397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 198 - 376
Target Start/End: Complemental strand, 3771293 - 3771115
Alignment:
| Q |
198 |
tcaatccctctgtttagccatgaatcttctgtaattgagttctgcaagagactcattcaagtccataaccacttccaaatcacttgcatcttccccacca |
297 |
Q |
| |
|
||||| ||||| |||||||| || |||| | |||||||||||||||||||| ||||| ||||| ||||| | || ||||||||||||||| |||| | |
|
|
| T |
3771293 |
tcaattcctctatttagccaccaaagttctattattgagttctgcaagagactaattcatctccatcaccacattcatatcacttgcatcttctccacta |
3771194 |
T |
|
| Q |
298 |
ttgatgcacctatcccagccaccctcaaattacttgaatctcttccttcaaccatacactgcactttcctccctccaat |
376 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
3771193 |
ttgatgcaccaatccctgccaccctcaaattacttgaatctcttccttcatccataaactgcactttcctccctccaat |
3771115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 198 - 376
Target Start/End: Original strand, 3718411 - 3718589
Alignment:
| Q |
198 |
tcaatccctctgtttagccatgaatcttctgtaattgagttctgcaagagactcattcaagtccataaccacttccaaatcacttgcatcttccccacca |
297 |
Q |
| |
|
||||| ||||| |||||||| || |||| | |||||||| ||||||||| | ||||| ||||| ||||| | || ||||||||||||||||||||| |
|
|
| T |
3718411 |
tcaattcctctatttagccaccaaagttctattattgagttttgcaagagattaattcatctccatcaccacattcatgtcacttgcatcttccccacca |
3718510 |
T |
|
| Q |
298 |
ttgatgcacctatcccagccaccctcaaattacttgaatctcttccttcaaccatacactgcactttcctccctccaat |
376 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||||||| |||||||| ||| ||||| | |||||||||||||||||||| |
|
|
| T |
3718511 |
ttgatgcaccaatccctgccaccctcaaattacttgagtctcttccgtcatccataaaatgcactttcctccctccaat |
3718589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 433 - 575
Target Start/End: Original strand, 3718646 - 3718791
Alignment:
| Q |
433 |
aatccatgccatcttttcgcgaatcgttgagtttgctttgttcaatttcaac---cacaccggttgtagcaatagttgttgatccttttgcaaaccaagc |
529 |
Q |
| |
|
|||||||||||| | |||| | | |||||| || ||||||||||||||||| |||||| || |||| | ||||||||||||||||||| ||||| |
|
|
| T |
3718646 |
aatccatgccatgtcttcggaacttgttgaggttactttgttcaatttcaacatgcacaccagtgtcagcattggttgttgatccttttgcaagtcaagc |
3718745 |
T |
|
| Q |
530 |
attagaaatagcgaaagagttcaacatcttatctttcatgtacttc |
575 |
Q |
| |
|
|||||||||||| ||||| || ||| |||||||||| || |||||| |
|
|
| T |
3718746 |
attagaaatagctaaagacttgaacctcttatcttttatatacttc |
3718791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 519 - 574
Target Start/End: Original strand, 3700548 - 3700603
Alignment:
| Q |
519 |
gcaaaccaagcattagaaatagcgaaagagttcaacatcttatctttcatgtactt |
574 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||||| ||||||||||||| ||||| |
|
|
| T |
3700548 |
gcaacccaagcattagaaatagcaaaagagttcaacctcttatctttcatatactt |
3700603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 495 - 565
Target Start/End: Complemental strand, 3770993 - 3770923
Alignment:
| Q |
495 |
gtagcaatagttgttgatccttttgcaaaccaagcattagaaatagcgaaagagttcaacatcttatcttt |
565 |
Q |
| |
|
|||||| | ||||||||||||| ||||| ||||||||||||||||| ||||| | |||||||||||||| |
|
|
| T |
3770993 |
gtagcattggttgttgatccttatgcaagtcaagcattagaaatagcaaaagactagaacatcttatcttt |
3770923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University