View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11121_high_55 (Length: 282)

Name: NF11121_high_55
Description: NF11121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11121_high_55
NF11121_high_55
[»] chr3 (8 HSPs)
chr3 (7-262)||(542920-543175)
chr3 (7-269)||(574883-575145)
chr3 (7-262)||(554851-555106)
chr3 (48-193)||(484206-484351)
chr3 (6-258)||(532564-532816)
chr3 (8-258)||(565149-565399)
chr3 (7-55)||(488221-488269)
chr3 (68-145)||(14961435-14961512)
[»] chr4 (2 HSPs)
chr4 (22-86)||(55768162-55768226)
chr4 (22-86)||(55832418-55832482)
[»] chr1 (3 HSPs)
chr1 (20-97)||(33856880-33856957)
chr1 (20-97)||(33923966-33924043)
chr1 (36-86)||(45191217-45191267)


Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-138; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 7 - 262
Target Start/End: Original strand, 542920 - 543175
Alignment:
Q  7 ctactaaccggtgtcaagctgaactggaggtgtgattcgatatttctttggcaagaaggcattgaatcccaaaattaaatcggtatgcccttgaaacagc 106  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  542920 ctactaaccggtgtcaagctgaactagaggtgtgattcgatatttctttgccaagaaggcattgaatcccaaaattaaatcggtatgcccttgaaacagc 543019  T
Q  107 tcattccctcttgccgcggtaacacttatatcaattcttccaatcttgaaatccttaacaatttctaaaaactcatgatacttttcctcattcttaccat 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  543020 tcattccctcttgccgcggtaacacttatatcaattcttccaatcttgaaatccttaacaatttctaaaaactcatgatacttttcctcattcttaccat 543119  T
Q  207 caaacatatcttttactttctcgagaaatgctgatgcatcttttgtctctaacata 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  543120 caaacatatcttttactttctcgagaaatgctgatgcatcttttgtctctaacata 543175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 7 - 269
Target Start/End: Original strand, 574883 - 575145
Alignment:
Q  7 ctactaaccggtgtcaagctgaactggaggtgtgattcgatatttctttggcaagaaggcattgaatcccaaaattaaatcggtatgcccttgaaacagc 106  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||    
T  574883 ctactaaccagtgtcaagctgaactggaggtgtgattcgatatttctttggcaagaaggcgttgaatcccaaaattaaatccgtatgcccttgaagcagc 574982  T
Q  107 tcattccctcttgccgcggtaacacttatatcaattcttccaatcttgaaatccttaacaatttctaaaaactcatgatacttttcctcattcttaccat 206  Q
    ||||||||||||||||| | ||||||||||||||||||||||  ||||||||||||| |||||| ||||||||||| |||||||||||||||||||||||    
T  574983 tcattccctcttgccgcagcaacacttatatcaattcttccagccttgaaatccttagcaatttttaaaaactcattatacttttcctcattcttaccat 575082  T
Q  207 caaacatatcttttactttctcgagaaatgctgatgcatcttttgtctctaacatatggcctt 269  Q
     ||||| ||||||||||||||||||||||||  |||||||||||||| |||||||||| ||||    
T  575083 gaaacacatcttttactttctcgagaaatgcaaatgcatcttttgtcgctaacatatgacctt 575145  T

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Target: chr3; HSP #3
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 7 - 262
Target Start/End: Original strand, 554851 - 555106
Alignment:
Q  7 ctactaaccggtgtcaagctgaactggaggtgtgattcgatatttctttggcaagaaggcattgaatcccaaaattaaatcggtatgcccttgaaacagc 106  Q
    ||||||||| ||||| |||||||||| || ||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||    
T  554851 ctactaaccagtgtccagctgaactgaagttgtgattcgatatttctttggcaagaaggcattgactccaaaaattaaatctgtatgcccttgaaacagc 554950  T
Q  107 tcattccctcttgccgcggtaacacttatatcaattcttccaatcttgaaatccttaacaatttctaaaaactcatgatacttttcctcattcttaccat 206  Q
    |||||| |||||||||||  |||||||||||||||||| | || ||| |||||||||||||||||||||||||||| ||||||||||  ||||||| |||    
T  554951 tcattcactcttgccgcgacaacacttatatcaattctccgaaacttaaaatccttaacaatttctaaaaactcatcatacttttccctattcttatcat 555050  T
Q  207 caaacatatcttttactttctcgagaaatgctgatgcatcttttgtctctaacata 262  Q
     ||||| ||||||||||||||||||||| ||  |||||||||||||||||||||||    
T  555051 gaaacacatcttttactttctcgagaaaagcaaatgcatcttttgtctctaacata 555106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 48 - 193
Target Start/End: Original strand, 484206 - 484351
Alignment:
Q  48 atttctttggcaagaaggcattgaatcccaaaattaaatcggtatgcccttgaaacagctcattccctcttgccgcggtaacacttatatcaattcttcc 147  Q
    ||||||||| ||||||| | |||||  ||||||||||||   ||||||||||||||||||||||| ||||||  |||  |||| || ||||||||  | |    
T  484206 atttctttgtcaagaagtccttgaactccaaaattaaatttttatgcccttgaaacagctcattcactcttgtagcgacaacatttctatcaattgctgc 484305  T
Q  148 aatcttgaaatccttaacaatttctaaaaactcatgatacttttcc 193  Q
    |  |  ||||||||||||||||||||||||||||| ||||||||||    
T  484306 agccaagaaatccttaacaatttctaaaaactcatcatacttttcc 484351  T

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Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 6 - 258
Target Start/End: Original strand, 532564 - 532816
Alignment:
Q  6 actactaaccggtgtcaagctgaactggaggtgtgattcgatatttctttggcaagaaggcattgaatcccaaaattaaatcggtatgcccttgaaacag 105  Q
    |||||||||| ||||||||||||  | || ||||| ||| |||| |||| |||||||||   |||||||||||||||||||| |||||||||| |||||     
T  532564 actactaaccagtgtcaagctgaggtcgaagtgtgtttccatatgtcttaggcaagaagttgttgaatcccaaaattaaatctgtatgccctttaaacaa 532663  T
Q  106 ctcattccctcttgccgcggtaacacttatatcaattcttccaatcttgaaatccttaacaatttctaaaaactcatgatacttttcctcattcttacca 205  Q
     || ||  ||||| |||||  | ||||| |||||||||| | |  |||||||||||| | || || |||||||||   ||||||||    |||||||||     
T  532664 atccttgactctttccgcgacaccacttgtatcaattctacaagccttgaaatccttcataagttttaaaaactcggcatacttttttctattcttacct 532763  T
Q  206 tcaaacatatcttttactttctcgagaaatgctgatgcatcttttgtctctaa 258  Q
      |||| ||||||||||||| | |||||| | | ||||||||||  |||||||    
T  532764 agaaacgtatcttttacttttttgagaaacgataatgcatctttaatctctaa 532816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 8 - 258
Target Start/End: Original strand, 565149 - 565399
Alignment:
Q  8 tactaaccggtgtcaagctgaactggaggtgtgattcgatatttctttggcaagaaggcattgaatcccaaaattaaatcggtatgcccttgaaacagct 107  Q
    |||||||| ||||||||||||  |  | ||||| ||| |||| |||| |||||||||   |||||||||||||||||||| |||||||||| |||||       
T  565149 tactaaccagtgtcaagctgaggtcaaagtgtgtttccatatgtcttaggcaagaagatgttgaatcccaaaattaaatctgtatgccctttaaacaaac 565248  T
Q  108 cattccctcttgccgcggtaacacttatatcaattcttccaatcttgaaatccttaacaatttctaaaaactcatgatacttttcctcattcttaccatc 207  Q
    | ||  ||||| |||||  | ||||| |||||||||| | |  |||||||||||| | || || |||||||||   ||||||||    |||||||||       
T  565249 ccttgactctttccgcgacaccacttgtatcaattctacaagccttgaaatccttcataagttttaaaaactcggcatacttttttctattcttacctgg 565348  T
Q  208 aaacatatcttttactttctcgagaaatgctgatgcatcttttgtctctaa 258  Q
    |||| ||||||||||||||| |||||| | | ||||||||||  |||||||    
T  565349 aaacgtatcttttactttcttgagaaacgataatgcatctttaatctctaa 565399  T

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Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 488221 - 488269
Alignment:
Q  7 ctactaaccggtgtcaagctgaactggaggtgtgattcgatatttcttt 55  Q
    ||||||||| ||||| |||||||||| ||||||||||||||||||||||    
T  488221 ctactaaccagtgtccagctgaactgaaggtgtgattcgatatttcttt 488269  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 145
Target Start/End: Complemental strand, 14961512 - 14961435
Alignment:
Q  68 ttgaatcccaaaattaaatcggtatgcccttgaaacagctcattccctcttgccgcggtaacacttatatcaattctt 145  Q
    |||||||||||||||| ||| |||||||||| || |||||| ||  ||||||| |||  | | |||||||||||||||    
T  14961512 ttgaatcccaaaattagatctgtatgccctttaagcagctccttgactcttgcagcgacacctcttatatcaattctt 14961435  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 55768226 - 55768162
Alignment:
Q  22 aagctgaactggaggtgtgattcgatatttctttggcaagaaggcattgaatcccaaaattaaat 86  Q
    ||||| || |||| |||||||||||| || || ||||| ||||||||||||||||||||||||||    
T  55768226 aagctcaaatggaagtgtgattcgatgttcctctggcaggaaggcattgaatcccaaaattaaat 55768162  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 55832482 - 55832418
Alignment:
Q  22 aagctgaactggaggtgtgattcgatatttctttggcaagaaggcattgaatcccaaaattaaat 86  Q
    ||||| || |||| |||||||||||| || || ||||| ||||||||||||||||||||||||||    
T  55832482 aagctcaaatggaagtgtgattcgatgttcctctggcaggaaggcattgaatcccaaaattaaat 55832418  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 97
Target Start/End: Complemental strand, 33856957 - 33856880
Alignment:
Q  20 tcaagctgaactggaggtgtgattcgatatttctttggcaagaaggcattgaatcccaaaattaaatcggtatgccct 97  Q
    ||||| |||| |||| |||||||| ||| || |||| ||| ||||| ||||||||||||||||||||  |||||||||    
T  33856957 tcaagttgaaatggaagtgtgatttgatgttcctttcgcaggaaggtattgaatcccaaaattaaatatgtatgccct 33856880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 97
Target Start/End: Original strand, 33923966 - 33924043
Alignment:
Q  20 tcaagctgaactggaggtgtgattcgatatttctttggcaagaaggcattgaatcccaaaattaaatcggtatgccct 97  Q
    ||||| |||| |||| |||||||| ||| || |||| ||| ||||| ||||||||||||||||||||  |||||||||    
T  33923966 tcaagttgaaatggaagtgtgatttgatgttcctttcgcaggaaggtattgaatcccaaaattaaatatgtatgccct 33924043  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 86
Target Start/End: Complemental strand, 45191267 - 45191217
Alignment:
Q  36 gtgtgattcgatatttctttggcaagaaggcattgaatcccaaaattaaat 86  Q
    |||||||| ||| || |||||||| |||||||||||| |||||||||||||    
T  45191267 gtgtgatttgatgttcctttggcaggaaggcattgaaccccaaaattaaat 45191217  T

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