View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11121_high_61 (Length: 263)
Name: NF11121_high_61
Description: NF11121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11121_high_61 |
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Alignment Details
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 39840013 - 39839769
Alignment:
| Q |
1 |
aacaacagaacaatataaatgttaaactcactcaccaggtggtgaccttcgagcacgaaaactcaatagacgaagacgaaatctgctgactatttccgag |
100 |
Q |
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| T |
39840013 |
aacaacagaacaatataaatgttaaactcactcaccaggtggtgaccttcgagcacgaagactcaatagacgaagacgaaatctgctgactatttccgag |
39839914 |
T |
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| Q |
101 |
gcggtaagatcagcagaagacgaagacgaaggatgatgttgcattttttgaagtgcgtctgagagtttgttcaattccatttctcaaaatccctaagcgg |
200 |
Q |
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| T |
39839913 |
gcggtaagatcagcagaagacgaagacgaaggatgatgttgcattttttgaagtgcgtctgagagtttgttcaattccatttctcaaaatccctaagcgg |
39839814 |
T |
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| Q |
201 |
gccccaattcacagaacaggcaagaaaatgaaaattattatgaat |
245 |
Q |
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| T |
39839813 |
gccccaattcacagaacaggcaagaaaatgaaaattattatgaat |
39839769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 44798390 - 44798584
Alignment:
| Q |
1 |
aacaacagaacaatataaatgttaaactcactcaccaggtg---gtgaccttcgagcacgaaaactcaatagacgaagacgaaatctgctgactatttcc |
97 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
44798390 |
aacaacagaacaatataaatgttaaactcactcaccaggtggtggtgaccttcgagcacgaagactcaatagacgaagacgaaatctgctgactatttcc |
44798489 |
T |
|
| Q |
98 |
---gaggcggtaagatcagca------gaagacgaagacgaaggatgatgttgcattttttgaagtgcgtctgagagtttgttcaattccatttc |
183 |
Q |
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| T |
44798490 |
aagggggtggtaggagcagcagaagacgaagacgaagacgaaggatgatgttccattttttgaagtaagtctgagagtttgttcaattccatttc |
44798584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 7 - 181
Target Start/End: Complemental strand, 39844923 - 39844740
Alignment:
| Q |
7 |
agaacaatataaatgttaaactcactcaccaggtggtg---accttcgagca------cgaaaactcaatagacgaagacgaaatctgctgactatttcc |
97 |
Q |
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|||| ||||||||||||||||||||||||||||||||| ||||||||||| | || || ||||||||||||| ||||||||||||||||| |
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| T |
39844923 |
agaataatataaatgttaaactcactcaccaggtggtggtgaccttcgagcaaatggaccaagacgagatagacgaagacggtatctgctgactatttcc |
39844824 |
T |
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| Q |
98 |
gaggcggtaagatcagcagaagacgaagacgaaggatgatgttgcattttttgaagtgcgtctgagagtttgttcaattccatt |
181 |
Q |
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| T |
39844823 |
gagtcggtaagatcagcaaaagacgaagacgaaggatgatgttgcattttttgaagtgcgaccgagggtttgttcaattccatt |
39844740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 35161719 - 35161583
Alignment:
| Q |
1 |
aacaacagaacaatataaatgttaaactcactcaccaggtggtg---accttcgagcacgaaaactcaatagacgaagacgaaatctgctgactatttcc |
97 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |||||||||||||||||||||||||||| |
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| T |
35161719 |
aacaacagaacaatataaatgttaaactcactcaccaggtggtggtgaccttcgagcacgaagactcaatacacgaagacgaaatctgctgactatttcc |
35161620 |
T |
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| Q |
98 |
ga---ggcggtaagatcagcagaagacgaagacgaag |
131 |
Q |
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| T |
35161619 |
gagggggtggtaggagcagcagaagacgaagacgaag |
35161583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 165
Target Start/End: Original strand, 44631184 - 44631224
Alignment:
| Q |
125 |
gacgaaggatgatgttgcattttttgaagtgcgtctgagag |
165 |
Q |
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||||||||| ||||||||||||||||| || |||||||||| |
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| T |
44631184 |
gacgaaggaggatgttgcattttttgatgtacgtctgagag |
44631224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 165
Target Start/End: Original strand, 44798164 - 44798204
Alignment:
| Q |
125 |
gacgaaggatgatgttgcattttttgaagtgcgtctgagag |
165 |
Q |
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||||||||| ||||||||||||||||| || |||||||||| |
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| T |
44798164 |
gacgaaggaggatgttgcattttttgatgtacgtctgagag |
44798204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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