View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11121_high_65 (Length: 254)

Name: NF11121_high_65
Description: NF11121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11121_high_65
NF11121_high_65
[»] scaffold0013 (1 HSPs)
scaffold0013 (1-245)||(93065-93309)
[»] chr4 (4 HSPs)
chr4 (1-89)||(162246-162334)
chr4 (139-240)||(103195-103296)
chr4 (1-83)||(103066-103148)
chr4 (139-240)||(162463-162567)
[»] chr7 (1 HSPs)
chr7 (9-83)||(13051974-13052048)
[»] chr3 (2 HSPs)
chr3 (21-83)||(12138115-12138177)
chr3 (166-209)||(12137987-12138030)
[»] chr8 (5 HSPs)
chr8 (21-83)||(5670850-5670912)
chr8 (172-240)||(5670686-5670754)
chr8 (172-240)||(5692434-5692502)
chr8 (172-240)||(5722774-5722842)
chr8 (21-83)||(5692596-5692658)


Alignment Details
Target: scaffold0013 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 93309 - 93065
Alignment:
Q  1 cttgcgctagagcgagacactggattcgtgatcatggtggtgtaacacatataccttcatggggaaaaacatggctttcggtaggtaccgnnnnnnnnna 100  Q
    |||| |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |    
T  93309 cttgtgctagagcaagacactggattcgtgttcatggtggtgtaacacatataccttcatggggaaaaacatggctttcggtaggtaccgttttttttta 93210  T
Q  101 ttcaatcaatataaaaatgtctgcaaactaacatataatatgtttctaatttgaataaatcttttacctatagatacttggtatttttgattggagtgga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||    
T  93209 ttcaatcaatataaaaatgtctgcaaactaacatataatatgtttctaatttgaatatatcttttacctatagatacttggtctttttgattggagtgga 93110  T
Q  201 agcaacccaatgccacctaaattttggctccttccttcatctctc 245  Q
    |||||||||||||||||| ||||||||||||||||||||| ||||    
T  93109 agcaacccaatgccacctgaattttggctccttccttcatttctc 93065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 7e-24; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 162246 - 162334
Alignment:
Q  1 cttgcgctagagcgagacactggattcgtgatcatggtggtgtaacacatataccttcatggggaaaaacatggctttcggtaggtacc 89  Q
    |||| |||||||| ||| |||||||||||||||| ||||||||||||| ||||||||||||||| ||||| ||||||||||||| ||||    
T  162246 cttgtgctagagccagaaactggattcgtgatcacggtggtgtaacacgtataccttcatgggggaaaacttggctttcggtagctacc 162334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 139 - 240
Target Start/End: Original strand, 103195 - 103296
Alignment:
Q  139 tatgtttctaatttgaataaatcttttacctatagatacttggtatttttgattggagtggaagcaacccaatgccacctaaattttggctccttccttc 238  Q
    |||||| |||||||||||  ||| |||||||||||||||||||| | |||||||||   ||||||||||||||||| ||| | |||||| ||||||||||    
T  103195 tatgttactaatttgaatgtatcatttacctatagatacttggtctctttgattggttgggaagcaacccaatgccccctgagttttggatccttccttc 103294  T
Q  239 at 240  Q
    ||    
T  103295 at 103296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 103066 - 103148
Alignment:
Q  1 cttgcgctagagcgagacactggattcgtgatcatggtggtgtaacacatataccttcatggggaaaaacatggctttcggta 83  Q
    |||| |||||||| ||| |||||||||| |  || |||||||| ||| |||||||||||||||||||||| ||||||||||||    
T  103066 cttgtgctagagccagaaactggattcgggcacacggtggtgtcacatatataccttcatggggaaaaacttggctttcggta 103148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 139 - 240
Target Start/End: Original strand, 162463 - 162567
Alignment:
Q  139 tatgtttctaatttgaataa---atcttttacctatagatacttggtatttttgattggagtggaagcaacccaatgccacctaaattttggctccttcc 235  Q
    |||||| || ||||||||||   ||| ||||| |||||||||||||| | | |||||||   ||||||||||||||||| ||| | |||||| |||||||    
T  162463 tatgttacttatttgaataatgtatcctttacgtatagatacttggtgtatatgattggtcgggaagcaacccaatgccccctgagttttggatccttcc 162562  T
Q  236 ttcat 240  Q
    |||||    
T  162563 ttcat 162567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 9 - 83
Target Start/End: Original strand, 13051974 - 13052048
Alignment:
Q  9 agagcgagacactggattcgtgatcatggtggtgtaacacatataccttcatggggaaaaacatggctttcggta 83  Q
    ||||| ||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||    
T  13051974 agagcaagaaactggattcgtgatcacggtggtgtaacgcatataccttcatggggaaaaacttggctttcggta 13052048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 21 - 83
Target Start/End: Complemental strand, 12138177 - 12138115
Alignment:
Q  21 tggattcgtgatcatggtggtgtaacacatataccttcatggggaaaaacatggctttcggta 83  Q
    ||||||| ||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||    
T  12138177 tggattcatgatcatggtggtgtgacacagataccttcatggggaaaaacttggctttcggta 12138115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 166 - 209
Target Start/End: Complemental strand, 12138030 - 12137987
Alignment:
Q  166 acctatagatacttggtatttttgattggagtggaagcaaccca 209  Q
    ||||||||||||||||| | |||||||||||||||| |||||||    
T  12138030 acctatagatacttggtgtatttgattggagtggaaccaaccca 12137987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 21 - 83
Target Start/End: Complemental strand, 5670912 - 5670850
Alignment:
Q  21 tggattcgtgatcatggtggtgtaacacatataccttcatggggaaaaacatggctttcggta 83  Q
    ||||||| ||||||||||||||| ||| |  ||||||||||||||||||  ||||||||||||    
T  5670912 tggattcatgatcatggtggtgtgacatacgtaccttcatggggaaaaatttggctttcggta 5670850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 240
Target Start/End: Complemental strand, 5670754 - 5670686
Alignment:
Q  172 agatacttggtatttttgattggagtggaagcaacccaatgccacctaaattttggctccttccttcat 240  Q
    ||||||||||||| ||||||||| ||| ||||||||||||||| ||| | |||||| | ||||| ||||    
T  5670754 agatacttggtatctttgattggcgtgcaagcaacccaatgccccctgagttttggatgcttccctcat 5670686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 240
Target Start/End: Complemental strand, 5692502 - 5692434
Alignment:
Q  172 agatacttggtatttttgattggagtggaagcaacccaatgccacctaaattttggctccttccttcat 240  Q
    ||||||||||||| ||||||||| ||| ||||||||||||||| ||| | |||||| | ||||| ||||    
T  5692502 agatacttggtatctttgattggcgtgcaagcaacccaatgcctcctgagttttggatgcttccctcat 5692434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 240
Target Start/End: Complemental strand, 5722842 - 5722774
Alignment:
Q  172 agatacttggtatttttgattggagtggaagcaacccaatgccacctaaattttggctccttccttcat 240  Q
    ||||||||||||| ||||||||| ||| ||||||||||||||| ||| | |||||| | ||||| ||||    
T  5722842 agatacttggtatctttgattggcgtgcaagcaacccaatgcctcctgagttttggatgcttccctcat 5722774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 83
Target Start/End: Complemental strand, 5692658 - 5692596
Alignment:
Q  21 tggattcgtgatcatggtggtgtaacacatataccttcatggggaaaaacatggctttcggta 83  Q
    ||||||| ||||||||||||||| ||| |  |||||||||||||||||   ||||||||||||    
T  5692658 tggattcatgatcatggtggtgtgacatacgtaccttcatggggaaaattttggctttcggta 5692596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University