View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11121_high_66 (Length: 252)
Name: NF11121_high_66
Description: NF11121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11121_high_66 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 13 - 171
Target Start/End: Complemental strand, 2203823 - 2203665
Alignment:
| Q |
13 |
agctatatggagtcagatcctttcaaaattgctgtggaaggtgtggagagattcaaggaacaaaactgtgatcttataattgttgataccagtggacgcc |
112 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||| || |||||||||||||||||||||||||||| ||||| || | |
|
|
| T |
2203823 |
agctatatggagtcagatcctgtgaaaattgctgtggaaggtgtggaaagattcaagaaagaaaactgtgatcttataattgttgatactagtgggcggc |
2203724 |
T |
|
| Q |
113 |
acaaacaagaagctgccctatttgaagaaatgcgtcaactttcagaagcaacggtattt |
171 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
2203723 |
acaaacaagaagctgctctttttgaagaaatgcgtcaagtttcagaagcaacggtattt |
2203665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 13 - 169
Target Start/End: Original strand, 44826288 - 44826444
Alignment:
| Q |
13 |
agctatatggagtcagatcctttcaaaattgctgtggaaggtgtggagagattcaaggaacaaaactgtgatcttataattgttgataccagtggacgcc |
112 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| || || ||||||||||||||||||||||||||| || | |
|
|
| T |
44826288 |
agctatatggagtcagatcctgtcaaaattgctgtggaaggtgtggaaagattcaaggaagaagaccatgatcttataattgttgataccagtgggcggc |
44826387 |
T |
|
| Q |
113 |
acaaacaagaagctgccctatttgaagaaatgcgtcaactttcagaagcaacggtat |
169 |
Q |
| |
|
||||||||||||| |||| |||||||||||||| |||||||| ||||| ||||||| |
|
|
| T |
44826388 |
acaaacaagaagcatccctttttgaagaaatgcgccaactttcggaagctacggtat |
44826444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 37 - 155
Target Start/End: Complemental strand, 33167778 - 33167657
Alignment:
| Q |
37 |
aaaattgctgtggaaggtgtggagagattcaaggaacaaaactgtgatcttataattgttgataccagtggacgccacaaacaa---gaagctgccctat |
133 |
Q |
| |
|
||||||| |||||||| |||||||| ||||||||| |||||| ||||||||||| ||||||||||||||| | ||||||||| |||| ||| || | |
|
|
| T |
33167778 |
aaaattgtggtggaaggcgtggagaggttcaaggaagaaaactatgatcttataagtgttgataccagtgggggtcacaaacaagaggaagatgctcttt |
33167679 |
T |
|
| Q |
134 |
ttgaagaaatgcgtcaactttc |
155 |
Q |
| |
|
||||||||||||| ||| |||| |
|
|
| T |
33167678 |
ttgaagaaatgcgccaagtttc |
33167657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 175
Target Start/End: Complemental strand, 33116080 - 33115938
Alignment:
| Q |
35 |
tcaaaattgctgtggaaggtgtggagagattcaaggaacaaaactgtgatcttataattgttgataccagtggacgccacaaac---aagaagctgccct |
131 |
Q |
| |
|
|||||||||| ||| |||||||||| |||| |||||| ||| |||||||||||||||||||||| ||||| | ||||||| |||||| ||| || |
|
|
| T |
33116080 |
tcaaaattgccgtgaaaggtgtggacagatgcaaggaggaaa-ctgtgatcttataattgttgatgtgagtggggggcacaaacaagaagaagatgctct |
33115982 |
T |
|
| Q |
132 |
atttgaagaaatgcgtcaactttcagaagcaacggtatttatta |
175 |
Q |
| |
|
|||||||||| | ||| ||||| |||||||||||||||||| |
|
|
| T |
33115981 |
tattgaagaaattcaccaagtttcaaaagcaacggtatttatta |
33115938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University