View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11121_high_72 (Length: 242)
Name: NF11121_high_72
Description: NF11121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11121_high_72 |
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Alignment Details
Target: chr2 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 63 - 225
Target Start/End: Original strand, 41572399 - 41572561
Alignment:
| Q |
63 |
taatgaggctgccatatgcaaaactgcacaaaaccagcacaggtcaccgcaatatacacaggataccccagcctcaaacttgtttactgctaaaaccgct |
162 |
Q |
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| T |
41572399 |
taataaggctgccatatgcaaaactgcacaaaaccagcacaggtcaccgcaatatacacagcataccccagcctcaaacttgtttactgctaaaaccgct |
41572498 |
T |
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| Q |
163 |
gaacacctcctcattaccgtaagaggcacgcttttggattccaactccactcgtagaacaaac |
225 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41572499 |
gaacacctcctcattaccgtaagaggcacgcttttggattccaactccactcgtagaacaaac |
41572561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 139; Significance: 7e-73; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 63 - 225
Target Start/End: Complemental strand, 27754102 - 27753941
Alignment:
| Q |
63 |
taatgaggctgccatatgcaaaactgcacaaaaccagcacaggtcaccgcaatatacacaggataccccagcctcaaacttgtttactgctaaaaccgct |
162 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||| |
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| T |
27754102 |
taatgaggctgccatatgcaaaactgcacaaaaccagcacgggtcaccgcaatataaacagcataccccagcctcaaacttgtt-actgctaaaaccgct |
27754004 |
T |
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| Q |
163 |
gaacacctcctcattaccgtaagaggcacgcttttggattccaactccactcgtagaacaaac |
225 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
27754003 |
gaacacctcctcattaccgtaagaggcacgcttttggattccaacttcactcgtagaacaaac |
27753941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 64 - 225
Target Start/End: Original strand, 21941917 - 21942078
Alignment:
| Q |
64 |
aatgaggctgccatatgcaaaactgcacaaaaccagcacaggtcaccgcaatata-cacaggataccccagcctcaaacttgtttactgctaaaaccgct |
162 |
Q |
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|||||||||||||||| | | ||||||||| |||||||| ||||||||||| || ||| | ||||||||||||||| ||||| |||| ||||| || |
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| T |
21941917 |
aatgaggctgccatataccatcctgcacaaa-ccagcacatgtcaccgcaatttaacacggcataccccagcctcaatcttgtag-ctgcgaaaactgca |
21942014 |
T |
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| Q |
163 |
gaacacctcctca-ttaccgtaagaggcacgcttttggattccaactccactcgtagaacaaac |
225 |
Q |
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|| | | | || |||| ||||||| || |||||||||||||||| ||||||||||||||||| |
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| T |
21942015 |
gagaaacccgtccgttactgtaagagacatgcttttggattccaacaccactcgtagaacaaac |
21942078 |
T |
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