View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11121_high_82 (Length: 238)
Name: NF11121_high_82
Description: NF11121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11121_high_82 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 111; Significance: 4e-56; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 34575735 - 34575597
Alignment:
| Q |
1 |
ctatgtcattaagggtacaggatttgaaattcaaaaatgcaattaaatgtgattaaatcacattttgccgctcaaatgcaaggattaggattttggaaat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||| ||||| |||| |
|
|
| T |
34575735 |
ctatgtcattaagggtacaggatttgaaattcaaaaatgcaattaaatgtggtttaatcacattttcccgctcaaatgcaaggattagggttttgcaaat |
34575636 |
T |
|
| Q |
101 |
gttgtgtgcattgtaggttaggattaaataataaggatt |
139 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| |||| |
|
|
| T |
34575635 |
gttgtgtgcattgtaggttaggattagataataatgatt |
34575597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 11 - 139
Target Start/End: Complemental strand, 13946775 - 13946646
Alignment:
| Q |
11 |
aagggtacaggatttgaaattcaaaaatgcaattaaatgtgattaaatcaca-ttttgccgctcaaatgcaaggattaggattttggaaatgttgtgtgc |
109 |
Q |
| |
|
|||||| || |||||||||||||||||| | |||||||||| |||||||||| |||| ||||||||| ||||||||||| ||||| || |||||||||| |
|
|
| T |
13946775 |
aagggtgcatgatttgaaattcaaaaatcccattaaatgtggttaaatcacaattttcccgctcaaaaccaaggattagggttttgcaattgttgtgtgc |
13946676 |
T |
|
| Q |
110 |
attgtaggttaggattaaataataaggatt |
139 |
Q |
| |
|
||||||| ||||||||| |||||||||||| |
|
|
| T |
13946675 |
attgtagtttaggattagataataaggatt |
13946646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 107; Significance: 9e-54; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 17830979 - 17830841
Alignment:
| Q |
1 |
ctatgtcattaagggtacaggatttgaaattcaaaaatgcaattaaatgtgattaaatcacattttgccgctcaaatgcaaggattaggattttggaaat |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||| ||||| |||| |
|
|
| T |
17830979 |
ctatgtcattaagggtataggatttgaaattcaaaaatgcaattaaatatggttaaatcacattttcccgctcaaatgcaaggattagggttttgcaaat |
17830880 |
T |
|
| Q |
101 |
gttgtgtgcattgtaggttaggattaaataataaggatt |
139 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
17830879 |
gttgtgtgcattgtaggttatgattagataataaggatt |
17830841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 77; Significance: 7e-36; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 11 - 138
Target Start/End: Complemental strand, 4865248 - 4865120
Alignment:
| Q |
11 |
aagggtacaggatttgaaattcaaaaatgcaattaaatgtgattaaatcaca-ttttgccgctcaaatgcaaggattaggattttggaaatgttgtgtgc |
109 |
Q |
| |
|
||||||||| |||||||||||||||||||| |||||||||| |||||||||| |||| ||||||||| ||||||||||| ||||| || |||||||||| |
|
|
| T |
4865248 |
aagggtacatgatttgaaattcaaaaatgccattaaatgtggttaaatcacaattttcccgctcaaaaccaaggattagggttttgcaattgttgtgtgc |
4865149 |
T |
|
| Q |
110 |
attgtaggttaggattaaataataaggat |
138 |
Q |
| |
|
||||||| ||||||||| ||||||||||| |
|
|
| T |
4865148 |
attgtagtttaggattagataataaggat |
4865120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 11 - 138
Target Start/End: Original strand, 55041454 - 55041582
Alignment:
| Q |
11 |
aagggtacaggatttgaaattcaaaaatgcaattaaatgtgattaaatcaca-ttttgccgctcaaatgcaaggattaggattttggaaatgttgtgtgc |
109 |
Q |
| |
|
||||||||| |||||||||||||||||||| |||||||||| |||||||||| |||| ||||||||| ||||||||||| ||||| || |||||||||| |
|
|
| T |
55041454 |
aagggtacatgatttgaaattcaaaaatgccattaaatgtggttaaatcacaattttcccgctcaaagccaaggattagggttttgcaattgttgtgtgc |
55041553 |
T |
|
| Q |
110 |
attgtaggttaggattaaataataaggat |
138 |
Q |
| |
|
||||||| ||||||||| ||||||||||| |
|
|
| T |
55041554 |
attgtagtttaggattagataataaggat |
55041582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 138
Target Start/End: Original strand, 30766072 - 30766108
Alignment:
| Q |
102 |
ttgtgtgcattgtaggttaggattaaataataaggat |
138 |
Q |
| |
|
||||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
30766072 |
ttgtgtgcattgtagtttaggattagataataaggat |
30766108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 11 - 140
Target Start/End: Original strand, 30410795 - 30410925
Alignment:
| Q |
11 |
aagggtacaggatttgaaattcaaaaatgcaattaaatgtgattaaatcaca-ttttgccgctcaaatgcaaggattaggattttggaaatgttgtgtgc |
109 |
Q |
| |
|
||||||||| |||||||||||||||||||| |||||||||| |||||||||| |||| ||||||||| ||||||||||| ||||| || |||||||||| |
|
|
| T |
30410795 |
aagggtacatgatttgaaattcaaaaatgccattaaatgtggttaaatcacaattttcccgctcaaagccaaggattagggttttgcaattgttgtgtgc |
30410894 |
T |
|
| Q |
110 |
attgtaggttaggattaaataataaggatta |
140 |
Q |
| |
|
||||||| |||| |||| ||||||||||||| |
|
|
| T |
30410895 |
attgtagtttagaattagataataaggatta |
30410925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 11 - 138
Target Start/End: Complemental strand, 35162082 - 35161954
Alignment:
| Q |
11 |
aagggtacaggatttgaaattcaaaaatgcaattaaatgtgattaaatcaca-ttttgccgctcaaatgcaaggattaggattttggaaatgttgtgtgc |
109 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||||||| || |||||||| | |||| |||||||||| ||||||||||| ||||| || |||||||||| |
|
|
| T |
35162082 |
aagggtacatgatttgaaattcaaaaatgccattaaatttggttaaatcataattttcccgctcaaatccaaggattagggttttgcaattgttgtgtgc |
35161983 |
T |
|
| Q |
110 |
attgtaggttaggattaaataataaggat |
138 |
Q |
| |
|
||||||| ||||||||| ||||||||||| |
|
|
| T |
35161982 |
attgtagtttaggattagataataaggat |
35161954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 11 - 139
Target Start/End: Original strand, 29395391 - 29395520
Alignment:
| Q |
11 |
aagggtacaggatttgaaattcaaaaatgcaattaaatgtgattaaatcaca-ttttgccgctcaaatgcaaggattaggattttggaaatgttgtgtgc |
109 |
Q |
| |
|
||||||||| ||||||||||||||||||| |||||||||| |||||||||| |||| ||||||||| ||| ||||||| ||||| || |||||||||| |
|
|
| T |
29395391 |
aagggtacatgatttgaaattcaaaaatgtcattaaatgtggttaaatcacaattttcccgctcaaagccaatgattagggttttgcaattgttgtgtgc |
29395490 |
T |
|
| Q |
110 |
attgtaggttaggattaaataataaggatt |
139 |
Q |
| |
|
||||||| ||||||||| |||||||||||| |
|
|
| T |
29395491 |
attgtagtttaggattagataataaggatt |
29395520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 22 - 138
Target Start/End: Original strand, 4328782 - 4328900
Alignment:
| Q |
22 |
atttgaaattcaaaaatgcaattaaatgtgattaaat-caca-ttttgccgctcaaatgcaaggattaggattttggaaatgttgtgtgcattgtaggtt |
119 |
Q |
| |
|
||||||||||||||| | |||||||||| |||| | |||| |||| ||||||||| ||||||||||| ||||| ||| ||||||||||||||| || |
|
|
| T |
4328782 |
atttgaaattcaaaattagcattaaatgtggttaagtgcacaattttcccgctcaaaaccaaggattagggttttgaaaaagttgtgtgcattgtacttt |
4328881 |
T |
|
| Q |
120 |
aggattaaataataaggat |
138 |
Q |
| |
|
||||||| ||||||||||| |
|
|
| T |
4328882 |
aggattagataataaggat |
4328900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 72; Significance: 7e-33; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 11 - 141
Target Start/End: Original strand, 1662526 - 1662657
Alignment:
| Q |
11 |
aagggtacaggatttgaaattcaaaaatgcaattaaatgtgattaaatcaca-ttttgccgctcaaatgcaaggattaggattttggaaatgttgtgtgc |
109 |
Q |
| |
|
||||||||| ||||||||||||||||||| ||||||| || |||||||||| |||| |||||||||| |||||||||| ||||| || |||||||||| |
|
|
| T |
1662526 |
aagggtacatgatttgaaattcaaaaatgacattaaatatggttaaatcacaattttcccgctcaaatctaaggattagggttttgcaattgttgtgtgc |
1662625 |
T |
|
| Q |
110 |
attgtaggttaggattaaataataaggattat |
141 |
Q |
| |
|
||||||| ||||||||| |||||||||||||| |
|
|
| T |
1662626 |
attgtagtttaggattagataataaggattat |
1662657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 11 - 138
Target Start/End: Complemental strand, 11142831 - 11142703
Alignment:
| Q |
11 |
aagggtacaggatttgaaattcaaaaatgcaattaaatgtgattaaatcaca-ttttgccgctcaaatgcaaggattaggattttggaaatgttgtgtgc |
109 |
Q |
| |
|
||||||||| |||||||||||||||||||| |||||||||| |||||| ||| |||| ||||||||| ||| ||||||| ||||| || |||| ||||| |
|
|
| T |
11142831 |
aagggtacatgatttgaaattcaaaaatgccattaaatgtggttaaataacaattttcccgctcaaagccaatgattagggttttgcaattgttatgtgc |
11142732 |
T |
|
| Q |
110 |
attgtaggttaggattaaataataaggat |
138 |
Q |
| |
|
||||||| ||||||||| ||||||||||| |
|
|
| T |
11142731 |
attgtagtttaggattagataataaggat |
11142703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 133
Target Start/End: Complemental strand, 41015229 - 41015105
Alignment:
| Q |
11 |
aagggtacaggatttgaaattcaaaaatgcaattaaatgtgattaaat-caca-ttttgccgctcaaatgcaaggattaggattttggaaatgttgtgtg |
108 |
Q |
| |
|
|||||||| |||||||||| ||||||||| |||||||||| |||| | |||| |||| |||||| || |||||||||| ||||| || ||| |||| |
|
|
| T |
41015229 |
aagggtactggatttgaaactcaaaaatggcattaaatgtggttaagtgcacaattttcccgctctaaatcaaggattagagttttgaaatagttatgtg |
41015130 |
T |
|
| Q |
109 |
cattgtaggttaggattaaataata |
133 |
Q |
| |
|
||||||| ||||||||| |||||| |
|
|
| T |
41015129 |
cattgtactttaggattagataata |
41015105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University