View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11121_high_88 (Length: 232)
Name: NF11121_high_88
Description: NF11121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11121_high_88 |
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Alignment Details
Target: chr4 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 15 - 214
Target Start/End: Complemental strand, 50245360 - 50245159
Alignment:
| Q |
15 |
cacagattaactaattatattcaagcctcggaaaggnnnnnnnnnctctctttcaagtttcaaaaacacaatccgtaaacaattaaatcaataaatataa |
114 |
Q |
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| T |
50245360 |
cacagattaactaattatattcaagcctcggaaaggaaaaaaaaactctctttcaagtttcaaaaacacaatccgtaaacaattaaatcaataaatataa |
50245261 |
T |
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| Q |
115 |
ttatatctcacnnnnnnnnaagaataatcatgtc--acttgatcttttaatatgactgattgatataatggtagaaacaaattcatatatggtacagctt |
212 |
Q |
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||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50245260 |
ttatatctcacttttttttaagaataatcatgtctcacttgatcttttaatatgactgattgatataatggtagaaacaaattcatatatggtacagctt |
50245161 |
T |
|
| Q |
213 |
aa |
214 |
Q |
| |
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|| |
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| T |
50245160 |
aa |
50245159 |
T |
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