View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11121_high_93 (Length: 218)
Name: NF11121_high_93
Description: NF11121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11121_high_93 |
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Alignment Details
Target: chr5 (Bit Score: 163; Significance: 3e-87; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 17 - 207
Target Start/End: Complemental strand, 13653238 - 13653048
Alignment:
| Q |
17 |
caccaattgcctcatgtgacaaaacttcctcttgtggagcccactccacaatcaaacctctctccttagtagtcctttccttaagttcttttattagtgt |
116 |
Q |
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| T |
13653238 |
caccaattgccttatgtgacaaaacttcctcttgtggagcccactccacaatcaaacctttctccttactagtcccttcctcaagttcttttattagtct |
13653139 |
T |
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| Q |
117 |
tttttcttgtaccatgtttggtctaatcacccacaagaatgcttttttgctgtttaacaaaccgtgccaaaactcaagtatttcttctctc |
207 |
Q |
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| T |
13653138 |
tttttcttgtaccatgtttggtctaatcacccacaagaatgcttttttgctgttcaacaaaccgtgccaaaactcaagtatttcttctctc |
13653048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 17 - 205
Target Start/End: Complemental strand, 13658711 - 13658523
Alignment:
| Q |
17 |
caccaattgcctcatgtgacaaaacttcctcttgtggagcccactccacaatcaaacctctctccttagtagtcctttccttaagttcttttattagtgt |
116 |
Q |
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| T |
13658711 |
caccaattgctttgtgtgacaaaacttcctcttgtggaacccaccccacaatcatccctttctctttagtagtcccttcctcaagctccttcaatagtcc |
13658612 |
T |
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| Q |
117 |
tttttcttgtaccatgtttggtctaatcacccacaagaatgcttttttgctgtttaacaaaccgtgccaaaactcaagtatttcttctc |
205 |
Q |
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| T |
13658611 |
tttttcttgtaccatgtttggcctaatcacccacaaaaatggttttttgctattcaataaaccgtgccaaatctcaatgatttcttctc |
13658523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 17 - 208
Target Start/End: Complemental strand, 13648183 - 13647992
Alignment:
| Q |
17 |
caccaattgcctcatgtgacaaaacttcctcttgtggagcccactccacaatcaaacctctctccttagtagtcctttccttaagttcttttattagtgt |
116 |
Q |
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|||||||||||| |||||||||||||||||||||||| ||||| | |||||||||||| | |||||| ||||| ||||| ||| || ||| || | |
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| T |
13648183 |
caccaattgccttatgtgacaaaacttcctcttgtgggacccacccaacaatcaaacctttttccttacgagtcccttcctcaagctcacttaataatcc |
13648084 |
T |
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| Q |
117 |
tttttcttgtaccatgtttggtctaatcacccacaagaatgcttttttgctgtttaacaaaccgtgccaaaactcaagtatttcttctctct |
208 |
Q |
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| T |
13648083 |
tttttcttgtaccatgtttggcctaatcacccataaaaactgttttttgctattcaataaaccatgccaaatctcaattatttcttctctct |
13647992 |
T |
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