View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11121_high_94 (Length: 218)

Name: NF11121_high_94
Description: NF11121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11121_high_94
NF11121_high_94
[»] chr3 (4 HSPs)
chr3 (5-49)||(9753354-9753398)
chr3 (5-55)||(42962431-42962481)
chr3 (146-216)||(20137139-20137209)
chr3 (5-49)||(10811271-10811315)
[»] chr7 (8 HSPs)
chr7 (4-49)||(41650840-41650885)
chr7 (6-70)||(35586647-35586711)
chr7 (5-47)||(2008725-2008767)
chr7 (12-49)||(31674947-31674984)
chr7 (6-50)||(33224960-33225004)
chr7 (5-49)||(37899104-37899148)
chr7 (5-49)||(37899459-37899503)
chr7 (5-49)||(37905970-37906014)
[»] chr5 (7 HSPs)
chr5 (6-47)||(31748473-31748514)
chr5 (5-49)||(29463131-29463175)
chr5 (5-45)||(38363495-38363535)
chr5 (5-49)||(5007626-5007670)
chr5 (5-49)||(8920214-8920258)
chr5 (15-47)||(16971993-16972025)
chr5 (1-49)||(21922036-21922084)
[»] chr4 (4 HSPs)
chr4 (5-49)||(42062523-42062567)
chr4 (160-218)||(47550857-47550915)
chr4 (6-47)||(17776533-17776574)
chr4 (5-49)||(2401746-2401790)
[»] chr8 (4 HSPs)
chr8 (6-49)||(39211178-39211221)
chr8 (7-49)||(12284161-12284203)
chr8 (5-49)||(3946376-3946420)
chr8 (15-47)||(34476302-34476334)
[»] chr2 (9 HSPs)
chr2 (6-49)||(30978024-30978067)
chr2 (5-44)||(31578570-31578609)
chr2 (5-47)||(2427892-2427934)
chr2 (5-55)||(40504362-40504412)
chr2 (5-49)||(2971706-2971750)
chr2 (5-49)||(6646959-6647003)
chr2 (15-47)||(30831900-30831932)
chr2 (5-49)||(32972796-32972840)
chr2 (5-49)||(40443185-40443229)
[»] chr1 (2 HSPs)
chr1 (6-49)||(45065793-45065836)
chr1 (5-47)||(47642500-47642542)
[»] scaffold0034 (1 HSPs)
scaffold0034 (5-46)||(22714-22755)
[»] chr6 (2 HSPs)
chr6 (5-49)||(1271424-1271468)
chr6 (5-49)||(28748248-28748292)


Alignment Details
Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 9753354 - 9753398
Alignment:
Q  5 gttgtcccacaagttgtcacaaaaaatgattgttcaaataacact 49  Q
    |||||||||||||||||||  ||||||||||||||||||||||||    
T  9753354 gttgtcccacaagttgtcaacaaaaatgattgttcaaataacact 9753398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 5 - 55
Target Start/End: Original strand, 42962431 - 42962481
Alignment:
Q  5 gttgtcccacaagttgtcacaaaaaatgattgttcaaataacacttatctt 55  Q
    |||||||||||||||||| || |||||| ||||||||||||||||| ||||    
T  42962431 gttgtcccacaagttgtcccataaaatggttgttcaaataacacttctctt 42962481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 216
Target Start/End: Original strand, 20137139 - 20137209
Alignment:
Q  146 gtggggttatgtgataagtgggtggcgtggatgaaagcctgtgtatttggaggaagtatgttgattcttgt 216  Q
    |||||||| ||||| || ||||||  |||||||||||| |||||||||||||| | |||||  ||||||||    
T  20137139 gtggggttgtgtgagaaatgggtgaggtggatgaaagcttgtgtatttggaggtaatatgtctattcttgt 20137209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 10811271 - 10811315
Alignment:
Q  5 gttgtcccacaagttgtcacaaaaaatgattgttcaaataacact 49  Q
    ||||||||| |||||||||  ||||||| ||||||||||||||||    
T  10811271 gttgtcccaaaagttgtcaacaaaaatggttgttcaaataacact 10811315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 41650840 - 41650885
Alignment:
Q  4 tgttgtcccacaagttgtcacaaaaaatgattgttcaaataacact 49  Q
    |||| |||||||||||||||  ||||||||||||||||||||||||    
T  41650840 tgttatcccacaagttgtcaacaaaaatgattgttcaaataacact 41650885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 70
Target Start/End: Complemental strand, 35586711 - 35586647
Alignment:
Q  6 ttgtcccacaagttgtcacaaaaaatgattgttcaaataacacttatcttaaacaaaatatgtat 70  Q
    |||||||||||||| ||  | |||||||||||||||||||||||  ||||||  |||||||||||    
T  35586711 ttgtcccacaagttatcctacaaaatgattgttcaaataacactcttcttaataaaaatatgtat 35586647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 2008767 - 2008725
Alignment:
Q  5 gttgtcccacaagttgtcacaaaaaatgattgttcaaataaca 47  Q
    ||||||| ||||||||||||| |||||| ||||||||||||||    
T  2008767 gttgtccaacaagttgtcacataaaatggttgttcaaataaca 2008725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 12 - 49
Target Start/End: Complemental strand, 31674984 - 31674947
Alignment:
Q  12 cacaagttgtcacaaaaaatgattgttcaaataacact 49  Q
    ||||||||||||  ||||||||||||||||||||||||    
T  31674984 cacaagttgtcaacaaaaatgattgttcaaataacact 31674947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 50
Target Start/End: Original strand, 33224960 - 33225004
Alignment:
Q  6 ttgtcccacaagttgtcacaaaaaatgattgttcaaataacactt 50  Q
    |||||||||||||| ||  | ||||||||||||||||||||||||    
T  33224960 ttgtcccacaagttatcctacaaaatgattgttcaaataacactt 33225004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 37899148 - 37899104
Alignment:
Q  5 gttgtcccacaagttgtcacaaaaaatgattgttcaaataacact 49  Q
    ||||||||||||||||||  | |||||| ||||||||||||||||    
T  37899148 gttgtcccacaagttgtcctacaaaatggttgttcaaataacact 37899104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 37899459 - 37899503
Alignment:
Q  5 gttgtcccacaagttgtcacaaaaaatgattgttcaaataacact 49  Q
    ||||||||||||||||||  | |||||| ||||||||||||||||    
T  37899459 gttgtcccacaagttgtcctacaaaatggttgttcaaataacact 37899503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 37905970 - 37906014
Alignment:
Q  5 gttgtcccacaagttgtcacaaaaaatgattgttcaaataacact 49  Q
    ||||||||||||||||||  | |||||| ||||||||||||||||    
T  37905970 gttgtcccacaagttgtcctacaaaatggttgttcaaataacact 37906014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 47
Target Start/End: Original strand, 31748473 - 31748514
Alignment:
Q  6 ttgtcccacaagttgtcacaaaaaatgattgttcaaataaca 47  Q
    |||||| | |||||||||||||||||||||||||||||||||    
T  31748473 ttgtccaataagttgtcacaaaaaatgattgttcaaataaca 31748514  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 29463131 - 29463175
Alignment:
Q  5 gttgtcccacaagttgtcacaaaaaatgattgttcaaataacact 49  Q
    |||||||||||||||||||  ||||||| ||||||||||||||||    
T  29463131 gttgtcccacaagttgtcaacaaaaatggttgttcaaataacact 29463175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 38363495 - 38363535
Alignment:
Q  5 gttgtcccacaagttgtcacaaaaaatgattgttcaaataa 45  Q
    ||||||||||||||||||||| |||||| ||||||||||||    
T  38363495 gttgtcccacaagttgtcacataaaatggttgttcaaataa 38363535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 5007670 - 5007626
Alignment:
Q  5 gttgtcccacaagttgtcacaaaaaatgattgttcaaataacact 49  Q
    ||||||||||||||||||  |||||||| ||||| ||||||||||    
T  5007670 gttgtcccacaagttgtctaaaaaaatggttgtttaaataacact 5007626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 8920214 - 8920258
Alignment:
Q  5 gttgtcccacaagttgtcacaaaaaatgattgttcaaataacact 49  Q
    ||||||||||||||||||  | |||||| ||||||||||||||||    
T  8920214 gttgtcccacaagttgtcctacaaaatggttgttcaaataacact 8920258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 47
Target Start/End: Complemental strand, 16972025 - 16971993
Alignment:
Q  15 aagttgtcacaaaaaatgattgttcaaataaca 47  Q
    |||||||||||| ||||||||||||||||||||    
T  16972025 aagttgtcacaataaatgattgttcaaataaca 16971993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 21922084 - 21922036
Alignment:
Q  1 ttttgttgtcccacaagttgtcacaaaaaatgattgttcaaataacact 49  Q
    |||||||||||||||| |||||  | |||||| ||||||||||||||||    
T  21922084 ttttgttgtcccacaaattgtcctagaaaatggttgttcaaataacact 21922036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 42062567 - 42062523
Alignment:
Q  5 gttgtcccacaagttgtcacaaaaaatgattgttcaaataacact 49  Q
    |||||||||||||||||| || |||||| ||||||||||||||||    
T  42062567 gttgtcccacaagttgtcccataaaatggttgttcaaataacact 42062523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 218
Target Start/End: Complemental strand, 47550915 - 47550857
Alignment:
Q  160 taagtgggtggcgtggatgaaagcctgtgtatttggaggaagtatgttgattcttgtca 218  Q
    |||||||||||| ||||||||||| ||||| || ||||| ||||||| ||| |||||||    
T  47550915 taagtgggtggcttggatgaaagcatgtgtcttcggaggtagtatgtcgatccttgtca 47550857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 6 - 47
Target Start/End: Complemental strand, 17776574 - 17776533
Alignment:
Q  6 ttgtcccacaagttgtcacaaaaaatgattgttcaaataaca 47  Q
    |||||||||||||||||||| |||||  ||||||||||||||    
T  17776574 ttgtcccacaagttgtcacataaaattgttgttcaaataaca 17776533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 2401746 - 2401790
Alignment:
Q  5 gttgtcccacaagttgtcacaaaaaatgattgttcaaataacact 49  Q
    ||||||||||||||||||  | |||||| ||||||||||||||||    
T  2401746 gttgtcccacaagttgtcctacaaaatggttgttcaaataacact 2401790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 49
Target Start/End: Original strand, 39211178 - 39211221
Alignment:
Q  6 ttgtcccacaagttgtcacaaaaaatgattgttcaaataacact 49  Q
    ||||| ||||||||||||  ||||||||||||||||||||||||    
T  39211178 ttgtctcacaagttgtcaacaaaaatgattgttcaaataacact 39211221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 49
Target Start/End: Complemental strand, 12284203 - 12284161
Alignment:
Q  7 tgtcccacaagttgtcacaaaaaatgattgttcaaataacact 49  Q
    |||||||||||||||||  ||||||| ||||||||||||||||    
T  12284203 tgtcccacaagttgtcaacaaaaatggttgttcaaataacact 12284161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 3946376 - 3946420
Alignment:
Q  5 gttgtcccacaagttgtcacaaaaaatgattgttcaaataacact 49  Q
    ||||||||||||||||||  | |||||| ||||||||||||||||    
T  3946376 gttgtcccacaagttgtcctacaaaatggttgttcaaataacact 3946420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 47
Target Start/End: Original strand, 34476302 - 34476334
Alignment:
Q  15 aagttgtcacaaaaaatgattgttcaaataaca 47  Q
    |||||||||||||||||| ||||||||||||||    
T  34476302 aagttgtcacaaaaaatggttgttcaaataaca 34476334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 49
Target Start/End: Original strand, 30978024 - 30978067
Alignment:
Q  6 ttgtcccacaagttgtcacaaaaaatgattgttcaaataacact 49  Q
    ||||||||||||||||| || |||||| ||||||||||||||||    
T  30978024 ttgtcccacaagttgtcccataaaatggttgttcaaataacact 30978067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 44
Target Start/End: Original strand, 31578570 - 31578609
Alignment:
Q  5 gttgtcccacaagttgtcacaaaaaatgattgttcaaata 44  Q
    ||||||| |||||||||||||| |||||||||||||||||    
T  31578570 gttgtccaacaagttgtcacaagaaatgattgttcaaata 31578609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 2427934 - 2427892
Alignment:
Q  5 gttgtcccacaagttgtcacaaaaaatgattgttcaaataaca 47  Q
    ||||||| |||| ||||||||||||||| ||||||||||||||    
T  2427934 gttgtccaacaaattgtcacaaaaaatggttgttcaaataaca 2427892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 55
Target Start/End: Original strand, 40504362 - 40504412
Alignment:
Q  5 gttgtcccacaagttgtcacaaaaaatgattgttcaaataacacttatctt 55  Q
    ||||||||||||||| |||  ||||||| ||||||||||||||||| ||||    
T  40504362 gttgtcccacaagttatcaacaaaaatggttgttcaaataacacttctctt 40504412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 2971750 - 2971706
Alignment:
Q  5 gttgtcccacaagttgtcacaaaaaatgattgttcaaataacact 49  Q
    ||||||||||||||||||  | |||||| ||||||||||||||||    
T  2971750 gttgtcccacaagttgtcttacaaaatggttgttcaaataacact 2971706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 6646959 - 6647003
Alignment:
Q  5 gttgtcccacaagttgtcacaaaaaatgattgttcaaataacact 49  Q
    ||||||||||||||||||  | |||||| ||||||||||||||||    
T  6646959 gttgtcccacaagttgtcctacaaaatggttgttcaaataacact 6647003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 47
Target Start/End: Original strand, 30831900 - 30831932
Alignment:
Q  15 aagttgtcacaaaaaatgattgttcaaataaca 47  Q
    |||||||||||| ||||||||||||||||||||    
T  30831900 aagttgtcacaataaatgattgttcaaataaca 30831932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 32972840 - 32972796
Alignment:
Q  5 gttgtcccacaagttgtcacaaaaaatgattgttcaaataacact 49  Q
    ||||||||||||||||||  | |||||| ||||||||||||||||    
T  32972840 gttgtcccacaagttgtcctacaaaatggttgttcaaataacact 32972796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 40443185 - 40443229
Alignment:
Q  5 gttgtcccacaagttgtcacaaaaaatgattgttcaaataacact 49  Q
    ||||||||||||||| |||  ||||||| ||||||||||||||||    
T  40443185 gttgtcccacaagttatcaacaaaaatggttgttcaaataacact 40443229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 49
Target Start/End: Complemental strand, 45065836 - 45065793
Alignment:
Q  6 ttgtcccacaagttgtcacaaaaaatgattgttcaaataacact 49  Q
    |||||||||||||||||  | |||||||||||||||||||||||    
T  45065836 ttgtcccacaagttgtcttacaaaatgattgttcaaataacact 45065793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 47642542 - 47642500
Alignment:
Q  5 gttgtcccacaagttgtcacaaaaaatgattgttcaaataaca 47  Q
    ||||||| |||||||||| ||||||||| ||||||||||||||    
T  47642542 gttgtccaacaagttgtcccaaaaaatggttgttcaaataaca 47642500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 22714 - 22755
Alignment:
Q  5 gttgtcccacaagttgtcacaaaaaatgattgttcaaataac 46  Q
    |||||||||||||||||| || |||||| |||||||||||||    
T  22714 gttgtcccacaagttgtcccataaaatggttgttcaaataac 22755  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 1271424 - 1271468
Alignment:
Q  5 gttgtcccacaagttgtcacaaaaaatgattgttcaaataacact 49  Q
    |||||||||||| ||||| || ||||| |||||||||||||||||    
T  1271424 gttgtcccacaaattgtcccataaaataattgttcaaataacact 1271468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 28748248 - 28748292
Alignment:
Q  5 gttgtcccacaagttgtcacaaaaaatgattgttcaaataacact 49  Q
    ||||||||||||||||||  | |||||| ||||||||||||||||    
T  28748248 gttgtcccacaagttgtcctacaaaatggttgttcaaataacact 28748292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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