View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11121_high_99 (Length: 204)

Name: NF11121_high_99

Description: NF11121

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF11121_high_99

[»] chr6 (1 HSPs)

[»] chr8 (1 HSPs)

Target: chr6 (Bit Score: 189; Significance: 1e-103; HSPs: 1)

Name: chr6

Description:

Target: chr6; HSP #1

Raw Score: 189; E-Value: 1e-103

Query Start/End: Original strand, 1 - 193

Target Start/End: Original strand, 30342529 - 30342721

Alignment:

Q	1	attgaagttagcctttgcttctcactctcccaagcattcttcctcccaccaccactcctcaccttaaaacctcccacatgcatgctacttactttgaacc	100	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	30342529	attgaagttagcctttgtttctcactctcccaagcattcttcctcccaccaccactcctcaccttaaaacctcccacatgcatgctacttactttgaacc	30342628	T

Q	101	tcttctcctcatcatcttcatcatgatcatcaccctttgtgtccacatttgttgtatgaattaacaccatcataggtcctccaactgcttcat	193	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	30342629	tcttctcctcatcatcttcatcatgatcatcaccctttgtgtccacatttgttgtatgaattaacaccatcataggtcctccaactgcttcat	30342721	T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 29; E-Value: 0.0000003

Query Start/End: Original strand, 54 - 110

Target Start/End: Complemental strand, 45030081 - 45030025

Alignment:

Q	54	actcctcaccttaaaacctcccacatgcatgctacttactttgaacctcttctcctc	110	Q
		\|\|\|\|\|\| \|\| \|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|
T	45030081	actcctaactttgaaaccacccacatgcatgcttgttactttgaacctcctctcctc	45030025	T

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