View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11121_low_10 (Length: 511)
Name: NF11121_low_10
Description: NF11121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11121_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-134; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 77 - 353
Target Start/End: Original strand, 15293468 - 15293741
Alignment:
| Q |
77 |
aattggagtttatgattagatcaccgatatgcaacacacggctacacctcttactcaagaggtacttctcacttgttgatacacgaacattggtgccaat |
176 |
Q |
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| T |
15293468 |
aattagagtttatgattagatcaccgatatgcaacacacggttacacctcttactcaagaggtacttctcacttgttgatacacgaacattggtgccaat |
15293567 |
T |
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| Q |
177 |
cgcggaacctcaataaaacttatacctaggcctcaagattccacattatggaaagaatcaaaatccatattccataggaaaatttctggtagtttatgat |
276 |
Q |
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| T |
15293568 |
cgcggaacctcaataaaacttatacctaggcctcaagattccacattatggaaagaaccaaaattcatattccataggaaaatttctggtagtttatgat |
15293667 |
T |
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| Q |
277 |
ggataaatttagcaagtgtactgatcttttgttcaagtagttatatttataagttcatctccacaaagattgtgaaa |
353 |
Q |
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| T |
15293668 |
ggataaatttagcaa---tactgatcttttgttcaagtagttatatttataagttcatcttcacaaagattgtgaaa |
15293741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 350 - 501
Target Start/End: Original strand, 15293820 - 15293971
Alignment:
| Q |
350 |
gaaaaaagagataaaacatcgataggccaggttggattttcctttcttttacttcttgataactgggtctagtgtctacaattgtctattggtttcacaa |
449 |
Q |
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| T |
15293820 |
gaaaaaagagataaaacatcgataggttaggttggattttcctctcttttacttcttggtaactgggtctagtgtctacaattgcctattgatttcacaa |
15293919 |
T |
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| Q |
450 |
catttgaacaaaagagttaggtcaatgtcttggtgattaacactcttctctg |
501 |
Q |
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| T |
15293920 |
cgtttgaacaaaagagttaggttaatgtcttggtgattaacactcttctctg |
15293971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 413 - 499
Target Start/End: Complemental strand, 17100007 - 17099921
Alignment:
| Q |
413 |
tgggtctagtgtctacaattgtctattggtttcacaacatttgaacaaaagagttaggtcaatgtcttggtgattaacactcttctc |
499 |
Q |
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| T |
17100007 |
tgggtctagtgtctacaattgtatacttagtacacgacgtttgaacaaaatagttaagtcaatgccttggtaattaacactcttctc |
17099921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 446 - 497
Target Start/End: Complemental strand, 20999326 - 20999275
Alignment:
| Q |
446 |
acaacatttgaacaaaagagttaggtcaatgtcttggtgattaacactcttc |
497 |
Q |
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| T |
20999326 |
acaacatttgaacaaaatagttaggtcaatatcttggtctgtaacactcttc |
20999275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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