View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11121_low_11 (Length: 504)

Name: NF11121_low_11
Description: NF11121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11121_low_11
NF11121_low_11
[»] chr3 (4 HSPs)
chr3 (75-357)||(26227411-26227693)
chr3 (412-493)||(26227094-26227175)
chr3 (360-413)||(26227238-26227291)
chr3 (1-56)||(26227689-26227744)
[»] chr2 (1 HSPs)
chr2 (54-232)||(28760046-28760223)
[»] chr5 (1 HSPs)
chr5 (25-301)||(36498030-36498305)
[»] scaffold0320 (1 HSPs)
scaffold0320 (80-194)||(6973-7086)
[»] scaffold0167 (1 HSPs)
scaffold0167 (80-194)||(9698-9811)
[»] chr8 (2 HSPs)
chr8 (257-300)||(15926822-15926865)
chr8 (154-300)||(19708983-19709124)


Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 75 - 357
Target Start/End: Complemental strand, 26227693 - 26227411
Alignment:
Q  75 aatgaaaagaccccactaaatttttaacaggaaagtggtggcccactatatcttgaaagttgtacggtaaagggaaaattgaaaagactatttttgaaag 174  Q
    ||||||||||| ||||||||||| |||| | |||||||||||||||||||||||||||||||||  |||||||| ||||||||||||| ||||||||||     
T  26227693 aatgaaaagactccactaaatttgtaactgaaaagtggtggcccactatatcttgaaagttgtatagtaaaggggaaattgaaaagaccatttttgaaaa 26227594  T
Q  175 taatgattagcatgacgtcattctcctaagaatacatgaagtattttcaaaatttccaattttcgtcttcatattttttctagtcgaaaatgacattttt 274  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||    
T  26227593 taatgattagcatgacgtcattctcctaagaatacatgaagtattttcaaaaatgccaatttttgtcttcatattttttctagtcgaaaatgacattttt 26227494  T
Q  275 aggtgcaatttgttggcctgtaatttttgggaggtaatttgttagccctacttccactttttaattcacataacattaatttt 357  Q
    ||| ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| ||||    
T  26227493 aggagcaatttgttggcctataatttttgggaggtaatttgttagctctacttccactttttaattcacgtaacattagtttt 26227411  T

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Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 412 - 493
Target Start/End: Complemental strand, 26227175 - 26227094
Alignment:
Q  412 tgaataagaaagggaagagtttccttcaaaaaacaaaagggaagnnnnnnnncaacaattaaataccatttatcgtgttcat 493  Q
    ||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||    
T  26227175 tgaataagaaagggaagagtttccttcaaaaaacaaaagggaagttttttttcaacaattaaataccatttatcgtgttcat 26227094  T

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Target: chr3; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 360 - 413
Target Start/End: Complemental strand, 26227291 - 26227238
Alignment:
Q  360 ctatgtttaatttaaccttaaaatattgcatacccggtcatccaaggccatatg 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26227291 ctatgtttaatttaaccttaaaatattgcatacccggtcatccaaggccatatg 26227238  T

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Target: chr3; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 26227744 - 26227689
Alignment:
Q  1 taatgatgaggaatggggaagcacgaaggagaggaagatgaagggttaacaaatga 56  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  26227744 taatgatgaggaatggggatgcacgaaggagaggaagatgaagggttaacaaatga 26227689  T

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Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 54 - 232
Target Start/End: Original strand, 28760046 - 28760223
Alignment:
Q  54 tgacatttggtgtcctagggcaatgaaaagaccccactaaatttttaacaggaaagtggtggcccactatatcttgaaagttgtacggtaaagggaaaat 153  Q
    ||||| |||||| |||||||||||| |||||||||||||| |||| ||| | ||||||| ||||||||| |||||| ||||||| |  |||| | | |||    
T  28760046 tgacacttggtgccctagggcaatggaaagaccccactaacttttcaactgcaaagtggcggcccactaaatcttg-aagttgtgcaataaaagaagaat 28760144  T
Q  154 tgaaaagactatttttgaaagtaatgattagcatgacgtcattctcctaagaatacatgaagtattttcaaaatttcca 232  Q
    ||||||||||||| ||| ||||||| |  | ||||| ||||| |||| | || ||||| | |||||||||||| |||||    
T  28760145 tgaaaagactattcttggaagtaattagaaacatgatgtcatcctccaaggagtacataatgtattttcaaaaattcca 28760223  T

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Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 25 - 301
Target Start/End: Original strand, 36498030 - 36498305
Alignment:
Q  25 gaaggagaggaagatgaagggttaacaaatgacatttggtgtcctagggcaa-tgaaaagaccccactaaatttttaacaggaaagtggtggcccactat 123  Q
    |||||||  |||||||||| |||||||| ||||| |||||| | |||||||| || ||||||||| |||| |||| |||   ||| |||||||||||||     
T  36498030 gaaggaggtgaagatgaagagttaacaagtgacacttggtgccttagggcaaatggaaagaccccgctaacttttcaactacaaattggtggcccactaa 36498129  T
Q  124 a-tcttgaaagttgtacggtaaagggaaaattgaaaagactatttttgaaagtaatgattagcatgacgtcattctcctaagaatacatgaagtattttc 222  Q
    | ||||| ||||||| |  | || | |||||||||||||| ||| ||||||||||| ||||||||| ||||  ||||  |||||||| |  ||| ||||     
T  36498130 attcttg-aagttgtgcattgaaagaaaaattgaaaagaccattcttgaaagtaataattagcatggcgtccgtctcgaaagaatacttagagt-tttta 36498227  T
Q  223 aaaatttccaattttcgtcttcatattttttctagtcg-aaaatgacatttttaggtgcaatttgttggcctgtaatttt 301  Q
    |||| |  ||||||||  ||||  || ||||| ||||| |||||||||||||| || |||||||||| || || ||||||    
T  36498228 aaaaatgtcaattttctccttc--atgttttcaagtcgaaaaatgacatttttgggggcaatttgttagcgtgcaatttt 36498305  T

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Target: scaffold0320 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0320
Description:

Target: scaffold0320; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 80 - 194
Target Start/End: Complemental strand, 7086 - 6973
Alignment:
Q  80 aaagaccccactaaatttttaacaggaaagtggtggcccactatatcttgaaagttgtacggtaaagggaaaattgaaaagactatttttgaaagtaatg 179  Q
    |||| |||||||||||||| ||| | ||||||||||||| ||| |||||||||| ||| | | ||| ||||| |||||||||| | | ||||||| |||     
T  7086 aaaggccccactaaattttcaactgcaaagtggtggcccgctaaatcttgaaag-tgtgcagcaaaaggaaagttgaaaagaccactcttgaaagcaata 6988  T
Q  180 attagcatgacgtca 194  Q
    |||||||||||||||    
T  6987 attagcatgacgtca 6973  T

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Target: scaffold0167 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0167
Description:

Target: scaffold0167; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 80 - 194
Target Start/End: Original strand, 9698 - 9811
Alignment:
Q  80 aaagaccccactaaatttttaacaggaaagtggtggcccactatatcttgaaagttgtacggtaaagggaaaattgaaaagactatttttgaaagtaatg 179  Q
    |||| |||||||||||||| ||| | ||||||||||||| ||| |||||||||| ||| | | ||| ||||| |||||||||| | | ||||||| |||     
T  9698 aaaggccccactaaattttcaactgcaaagtggtggcccgctaaatcttgaaag-tgtgcagcaaaaggaaagttgaaaagaccactcttgaaagcaata 9796  T
Q  180 attagcatgacgtca 194  Q
    |||||||||||||||    
T  9797 attagcatgacgtca 9811  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 257 - 300
Target Start/End: Original strand, 15926822 - 15926865
Alignment:
Q  257 gtcgaaaatgacatttttaggtgcaatttgttggcctgtaattt 300  Q
    |||||||||||||||||| || ||| ||||||||||||||||||    
T  15926822 gtcgaaaatgacatttttgggggcattttgttggcctgtaattt 15926865  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 154 - 300
Target Start/End: Original strand, 19708983 - 19709124
Alignment:
Q  154 tgaaaagactatttttgaaagtaatgattagcatgacgtcattctcctaagaatacatgaagtattttcaaaatttccaattttcgtcttcatatttttt 253  Q
    |||||||| || | ||||||||||| |||| ||||||||||| |||| || |||||||  ||| ||||||||| | |||| ||||  |||||||||||      
T  19708983 tgaaaagaatactcttgaaagtaataattatcatgacgtcatcctcc-aaaaatacat--agtgttttcaaaaatgccaactttctccttcatatttt-- 19709077  T
Q  254 ctagtcgaaaatgaca-tttttaggtgcaatttgttggcctgtaattt 300  Q
     ||||| |||||| || ||||| || |||||||||| ||| |||||||    
T  19709078 -tagtcaaaaatggcattttttgggggcaatttgttagccagtaattt 19709124  T

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