View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11121_low_12 (Length: 498)

Name: NF11121_low_12
Description: NF11121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11121_low_12
NF11121_low_12
[»] chr8 (5 HSPs)
chr8 (21-498)||(19975479-19975956)
chr8 (21-498)||(21016877-21017354)
chr8 (28-487)||(27860239-27860706)
chr8 (73-125)||(13219322-13219374)
chr8 (85-125)||(15235977-15236017)
[»] chr4 (2 HSPs)
chr4 (23-293)||(5073943-5074213)
chr4 (161-292)||(10177168-10177298)
[»] scaffold0417 (1 HSPs)
scaffold0417 (25-430)||(4499-4905)
[»] chr5 (12 HSPs)
chr5 (188-396)||(25188010-25188218)
chr5 (163-431)||(38232639-38232909)
chr5 (25-117)||(38232521-38232613)
chr5 (23-126)||(25239972-25240075)
chr5 (23-126)||(25304125-25304228)
chr5 (21-151)||(25188229-25188359)
chr5 (188-345)||(25232018-25232174)
chr5 (188-345)||(25296176-25296332)
chr5 (21-151)||(25232185-25232314)
chr5 (25-127)||(25236402-25236504)
chr5 (21-151)||(25296343-25296472)
chr5 (25-127)||(25300562-25300664)
[»] chr3 (2 HSPs)
chr3 (203-412)||(8225945-8226152)
chr3 (25-207)||(8224440-8224621)
[»] chr1 (1 HSPs)
chr1 (22-243)||(34516379-34516602)
[»] scaffold0013 (2 HSPs)
scaffold0013 (25-65)||(98295-98335)
scaffold0013 (211-260)||(98481-98530)


Alignment Details
Target: chr8 (Bit Score: 377; Significance: 0; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 21 - 498
Target Start/End: Complemental strand, 19975956 - 19975479
Alignment:
Q  21 acaggaatattggatggagagaaccttgtatgaaatagcaggggctatccgaactccgttgttaattgataatgttactaagaacagattgtttggtcat 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  19975956 acaggaatattggatggagagaaccttgtatgaaatagcaggggctatcagaactccattgttaattgataatgttactaagaacagattgtttggtcat 19975857  T
Q  121 tatgccaaagttttgaaggacttagacctttttgagaaccttttttatgaagttatggtggaacgggaaggttatgcatttccggtggaaattgaatacg 220  Q
    |||||||||||||||| ||||||||||||||  |||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |    
T  19975856 tatgccaaagttttgatggacttagacctttccgagaaccttttttaagaagttatggtggaacgggaaggttatgcatttccggtggcaattgaatatg 19975757  T
Q  221 aggggctgcctgacttttgcactcactgtaaaagtattggacataatataacatcttgctggtggttacatccnnnnnnntcagacaaactagagaaggt 320  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||  |||||||||    
T  19975756 aggggctgcctgacttttgcactcactgtaaaagtattggacataatataacatcttgctggtggttacatccgaaaaaatcagacaaagaagagaaggt 19975657  T
Q  321 tcttccaattaataaagggaaaaaattgaactttcgcagaagcagtccacgcaaggatcgaaaacaaaggataatccctctggcattggctcctctaagg 420  Q
    ||||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |    
T  19975656 tcttccaattaataaagggaaaaaactgaactttcacagtagcagtccacgcaaggatggaaagcaaaggataatccctctggcattggctcctctaaag 19975557  T
Q  421 attttgaggcttcgatatgagccgctctttctccccatgtgagcaggaggtgcacacagaccatggagttaaggttgc 498  Q
    ||||||||||||||||| |||||||||||||||||||||| |||||||||||||| |||||||||||| |||||||||    
T  19975556 attttgaggcttcgatacgagccgctctttctccccatgtcagcaggaggtgcacgcagaccatggagctaaggttgc 19975479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 21 - 498
Target Start/End: Original strand, 21016877 - 21017354
Alignment:
Q  21 acaggaatattggatggagagaaccttgtatgaaatagcaggggctatccgaactccgttgttaattgataatgttactaagaacagattgtttggtcat 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  21016877 acaggaatattggatggagagaaccttgtatgaaatagcaggggctatcagaactccattgttaattgataatgttactaagaacagattgtttggtcat 21016976  T
Q  121 tatgccaaagttttgaaggacttagacctttttgagaaccttttttatgaagttatggtggaacgggaaggttatgcatttccggtggaaattgaatacg 220  Q
    |||||||||||||||| ||||||||||||||  |||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |    
T  21016977 tatgccaaagttttgatggacttagacctttccgagaaccttttttaagaagttatggtggaacgggaaggttatgcatttccggtggcaattgaatatg 21017076  T
Q  221 aggggctgcctgacttttgcactcactgtaaaagtattggacataatataacatcttgctggtggttacatccnnnnnnntcagacaaactagagaaggt 320  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||  |||||||||    
T  21017077 aggggctgcctgacttttgcactcactgtaaaagtattggacataatataacatcttgctggtggttacatccgaaaaaatcagacaaagaagagaaggt 21017176  T
Q  321 tcttccaattaataaagggaaaaaattgaactttcgcagaagcagtccacgcaaggatcgaaaacaaaggataatccctctggcattggctcctctaagg 420  Q
    ||||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |    
T  21017177 tcttccaattaataaagggaaaaaactgaactttcacagtagcagtccacgcaaggatggaaagcaaaggataatccctctggcattggctcctctaaag 21017276  T
Q  421 attttgaggcttcgatatgagccgctctttctccccatgtgagcaggaggtgcacacagaccatggagttaaggttgc 498  Q
    ||||||||||||||||| |||||||||||||||||||||| |||||||||||||| |||||||||||| |||||||||    
T  21017277 attttgaggcttcgatacgagccgctctttctccccatgtcagcaggaggtgcacgcagaccatggagctaaggttgc 21017354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 28 - 487
Target Start/End: Complemental strand, 27860706 - 27860239
Alignment:
Q  28 tattggatggagagaaccttgtatgaaatagcaggggctatccgaactccgttgttaattgataatgttactaagaacagattgtttggtcattatgcca 127  Q
    |||||||| ||||||||||||||||||||||  ||||||||| ||||||||||| ||||||||||||||||||| ||||  ||| |||||||||| ||||    
T  27860706 tattggatagagagaaccttgtatgaaatagtgggggctatcagaactccgttgataattgataatgttactaaaaacatgttgattggtcattaagcca 27860607  T
Q  128 aagttttgaaggacttagacctttttgagaaccttttttatgaagttatggtggaacgggaaggttatgcatttccggtggaaattgaatacgaggggct 227  Q
    | ||||||  ||| |||||||||| ||||||| ||||| ||||||||||||||||||  |||||||||||||| |  ||||||||||||||||||||| |    
T  27860606 aggttttggtggatttagacctttctgagaacattttt-atgaagttatggtggaacatgaaggttatgcattcctagtggaaattgaatacgaggggtt 27860508  T
Q  228 gcctgacttttgcactcactgtaaaagtattggacataatataacatcttgctggtggttacatccnnnnnnntcagac-----aaactagagaaggttc 322  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||  |||||||| || |       |  |||     |||| |||||||||||    
T  27860507 gcctgacttttgcactcactgtaaaagtattggacataatgtaacatcttgtcggtggttatattcgaaaaaatttgacaaattaaacaagagaaggttc 27860408  T
Q  323 ttccaattaataaaggg---aaaaaattgaactttcgcagaagcagtccacgcaaggatcgaaaacaaaggataatccctctggcattggctcctctaag 419  Q
    ||||| || ||||| ||   |||||||||||||||| ||||||| |||||| || |||| ||||  |||||||||||||||  |||| ||||||||||      
T  27860407 ttccagttgataaaagggaaaaaaaattgaactttcacagaagcggtccacacatggatggaaagtaaaggataatccctccagcataggctcctctaca 27860308  T
Q  420 gattttgaggcttcgatatgagccgctctttctccccat-gtgagcaggaggtgcacacagaccatgga 487  Q
    |  ||||||||||| |||  ||| |||| ||||||||||  | |||||||||||||| |||||||||||    
T  27860307 gcctttgaggcttcaatacaagctgctccttctccccatcatcagcaggaggtgcacgcagaccatgga 27860239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 73 - 125
Target Start/End: Original strand, 13219322 - 13219374
Alignment:
Q  73 actccgttgttaattgataatgttactaagaacagattgtttggtcattatgc 125  Q
    ||||||||| | |||||| |||||||||||||| | |||||||||||||||||    
T  13219322 actccgttgctcattgatcatgttactaagaaccgtttgtttggtcattatgc 13219374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 85 - 125
Target Start/End: Complemental strand, 15236017 - 15235977
Alignment:
Q  85 attgataatgttactaagaacagattgtttggtcattatgc 125  Q
    ||||| ||||| || ||||||||||||||||||||||||||    
T  15236017 attgacaatgtgacgaagaacagattgtttggtcattatgc 15235977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 167; Significance: 3e-89; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 23 - 293
Target Start/End: Original strand, 5073943 - 5074213
Alignment:
Q  23 aggaatattggatggagagaaccttgtatgaaatagcaggggctatccgaactccgttgttaattgataatgttactaagaacagattgtttggtcatta 122  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||| ||||||||||||  ||||||||||||||    
T  5073943 aggaatattggatggagagaaccttgtatgaaatagcgggggctatcgggactccgttgttaattgataatcttactaagaacatgttgtttggtcatta 5074042  T
Q  123 tgccaaagttttgaaggacttagacctttttgagaaccttttttatgaagttatggtggaacgggaaggttatgcatttccggtggaaattgaatacgag 222  Q
    |||||| ||||||   ||||||||| ||| |   ||| |||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||     
T  5074043 tgccaaggttttgttagacttagacgtttgtagaaacattttttatgaagttatggtggaacaggaaggttatgcattttcggtggaaattgaatacgat 5074142  T
Q  223 gggctgcctgacttttgcactcactgtaaaagtattggacataatataacatcttgctggtggttacatcc 293  Q
    ||| ||||||||||||||||||||||||||  ||||||||||||| ||  || ||||||||||||||||||    
T  5074143 gggttgcctgacttttgcactcactgtaaacatattggacataatgtattattttgctggtggttacatcc 5074213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 161 - 292
Target Start/End: Original strand, 10177168 - 10177298
Alignment:
Q  161 ttttttatgaagttatggtggaacgggaaggttatgcatttccggtggaaattgaatacgaggggctgcctgacttttgcactcactgtaaaagtattgg 260  Q
    |||||||||||||||||||||||  | |||||| |||||| || || || |||||||| || |||||||  || ||||||||||| |||||||| ||||     
T  10177168 ttttttatgaagttatggtggaatagaaaggttttgcattccccgttgagattgaatatga-gggctgctggaattttgcactcattgtaaaagcattga 10177266  T
Q  261 acataatataacatcttgctggtggttacatc 292  Q
     |||||| |||||||||||   ||||||||||    
T  10177267 ccataatttaacatcttgcctatggttacatc 10177298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0417 (Bit Score: 154; Significance: 2e-81; HSPs: 1)
Name: scaffold0417
Description:

Target: scaffold0417; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 25 - 430
Target Start/End: Original strand, 4499 - 4905
Alignment:
Q  25 gaatattggatggagagaaccttgtatgaaatagcaggggctatccgaactccgttgttaattgataatgttactaagaacagattgtttggtcattatg 124  Q
    ||||||||||||||||||||||||||| ||||||   || ||||| | ||||||||  |||||||||||||||||||||||| |||||||||||||||||    
T  4499 gaatattggatggagagaaccttgtattaaatagagtggtctatcgggactccgtttctaattgataatgttactaagaacaaattgtttggtcattatg 4598  T
Q  125 ccaaagttttgaaggacttagacctttttgagaaccttttttatgaagttatggtggaacgggaaggttatgcatttccggtggaaattgaatacgaggg 224  Q
      | |||||||  ||||||||||||||  | |||| |||||||||||||||||||| ||||||||||||||||||||||| ||| ||   |||| |||||    
T  4599 ttagagttttggtggacttagacctttccgggaacattttttatgaagttatggtgcaacgggaaggttatgcatttccgatggcaacgaaataggaggg 4698  T
Q  225 gctgcctgacttttgcactcactgtaaaagtattggacataatataacatcttgctggtggttacatccnnnnnnntcagacaaactagagaaggttctt 324  Q
    ||||||||| ||||||||||||||||||||||||| ||||||| || ||||||   | |||||||||||       | ||||||||   | |||||||||    
T  4699 gctgcctgagttttgcactcactgtaaaagtattgcacataatgtatcatcttttcgatggttacatccgaaaaattaagacaaacacaataaggttctt 4798  T
Q  325 ccaattaataaagggaaaaa-attgaactttcgcagaagcagtccacgcaaggatcgaaaacaaaggataatccctctggcattggctcctctaaggatt 423  Q
    |   || ||||| |||||||  |||||||||| || |||||||||| |||||||| ||||  ||||||||||||||| | ||| ||||||||||| | ||    
T  4799 cttgttgataaacggaaaaatgttgaactttcacataagcagtccaggcaaggatggaaagaaaaggataatccctccgacataggctcctctaaagctt 4898  T
Q  424 ttgaggc 430  Q
    |||||||    
T  4899 ttgaggc 4905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 72; Significance: 2e-32; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 188 - 396
Target Start/End: Complemental strand, 25188218 - 25188010
Alignment:
Q  188 aaggttatgcatttccggtggaaattgaatacgaggggctgcctgacttttgcactcactgtaaaagtattggacataatataacatcttgctggtggtt 287  Q
    |||||||||||||||| |  ||||||||||||||||| |||||||| ||||||| ||| |||||||||||||| |||| | ||| |||||| ||||||||    
T  25188218 aaggttatgcatttccagcagaaattgaatacgagggactgcctgagttttgcattcattgtaaaagtattggccatagtgtaaaatcttgttggtggtt 25188119  T
Q  288 acatccnnnnnnntcagacaaactagagaaggttcttccaattaataaagggaaaaaattgaactttcgcagaagcagtccacgcaaggatcgaaaacaa 387  Q
    ||||||       |||||||||||||||||| ||| || | || | |||||||||||| ||| | ||   ||| |||||| || ||||||| |||| |||    
T  25188118 acatccgaacagatcagacaaactagagaagattcatctagttgacaaagggaaaaaactgagcattattagacgcagtctacacaaggatggaaatcaa 25188019  T
Q  388 aggataatc 396  Q
    |||||||||    
T  25188018 aggataatc 25188010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 163 - 431
Target Start/End: Original strand, 38232639 - 38232909
Alignment:
Q  163 ttttatgaagttatggtggaacgggaaggttatgcatttccggtggaaattgaatacgaggggctgcctgacttttgcactcactgtaaaagtattggac 262  Q
    ||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||| | ||||| | |||||||||||||| || || ||||||||||| |    
T  38232639 ttttatgaaattatggtggaaagggaaggttatgcatttccggtggagattgaatgcaaggggttacctgacttttgcacgcattgcaaaagtattggcc 38232738  T
Q  263 ataatataacatcttgctggtggttacatccnnnnnnntcagacaaactagagaaggttcttccaattaataaaggg--aaaaaattgaactttcgcaga 360  Q
    ||||| ||| ||| ||| |||||||||| ||       ||||| |||| ||| |||||||  | | |  | ||||||  ||||||||||||  ||  |||    
T  38232739 ataatgtaatatcctgccggtggttacacccgaaaaaatcagagaaacaagataaggttccccgagtggacaaagggaaaaaaaattgaacactcttaga 38232838  T
Q  361 agcagtccacgcaaggatcgaaaacaaaggataatccctctggcattggctcctctaaggattttgaggct 431  Q
    |||||||| ||||||||| | ||   ||||||||||| || | |||||||||||| || | ||||||||||    
T  38232839 agcagtccccgcaaggatggcaattgaaggataatccttccgacattggctcctccaaagcttttgaggct 38232909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 25 - 117
Target Start/End: Original strand, 38232521 - 38232613
Alignment:
Q  25 gaatattggatggagagaaccttgtatgaaatagcaggggctatccgaactccgttgttaattgataatgttactaagaacagattgtttggt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||| ||| |||||||| |||||||||    
T  38232521 gaatattggatggagagaaccttgtatgaaatagcaggggctatcggaactcctttgctaattgataatgctacgaagaacaggttgtttggt 38232613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 23 - 126
Target Start/End: Complemental strand, 25240075 - 25239972
Alignment:
Q  23 aggaatattggatggagagaaccttgtatgaaatagcaggggctatccgaactccgttgttaattgataatgttactaagaacagattgtttggtcatta 122  Q
    |||||||||||||||||||||| ||||||||||||||| |||||||| | || ||||||||||| ||||||||||| |||||||| ||||||||||| ||    
T  25240075 aggaatattggatggagagaactttgtatgaaatagcatgggctatcgggacaccgttgttaatcgataatgttaccaagaacaggttgtttggtcacta 25239976  T
Q  123 tgcc 126  Q
    ||||    
T  25239975 tgcc 25239972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 23 - 126
Target Start/End: Complemental strand, 25304228 - 25304125
Alignment:
Q  23 aggaatattggatggagagaaccttgtatgaaatagcaggggctatccgaactccgttgttaattgataatgttactaagaacagattgtttggtcatta 122  Q
    |||||||||||||||||||||| ||||||||||||||| |||||||| | || ||||||||||| ||||||||||| |||||||| ||||||||||| ||    
T  25304228 aggaatattggatggagagaactttgtatgaaatagcatgggctatcgggacaccgttgttaatcgataatgttaccaagaacaggttgtttggtcacta 25304129  T
Q  123 tgcc 126  Q
    ||||    
T  25304128 tgcc 25304125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 21 - 151
Target Start/End: Complemental strand, 25188359 - 25188229
Alignment:
Q  21 acaggaatattggatggagagaaccttgtatgaaatagcaggggctatccgaactccgttgttaattgataatgttactaagaacagattgtttggtcat 120  Q
    ||||||||||||| |||||||||| ||||||||||||||| | |||||| | || ||||||||| | |||||||||||||||||||| |||||||||||     
T  25188359 acaggaatattgggtggagagaacattgtatgaaatagcaagagctatcgggacaccgttgttagtcgataatgttactaagaacaggttgtttggtcac 25188260  T
Q  121 tatgccaaagttttgaaggacttagaccttt 151  Q
    |||||||| || ||   ||||||||||||||    
T  25188259 tatgccaaggtgtttgtggacttagaccttt 25188229  T

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Target: chr5; HSP #7
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 188 - 345
Target Start/End: Complemental strand, 25232174 - 25232018
Alignment:
Q  188 aaggttatgcatttccggtggaaattgaatacgaggggctgcctgacttttgcactcactgtaaaagtattggacataatataacatcttgctggtggtt 287  Q
    |||||||||||||||| |  ||||||||||||||||| |||||||| ||||||| ||| |||||||||||||| |||||| ||| |||||| ||||||||    
T  25232174 aaggttatgcatttccagcagaaattgaatacgagggactgcctgagttttgcattcattgtaaaagtattggccataatgtaaaatcttgttggtggtt 25232075  T
Q  288 acatccnnnnnnntcagacaaactagagaaggttcttccaattaataaagggaaaaaa 345  Q
    || |||       || ||||||||||||||| ||| |||| || | ||||||||||||    
T  25232074 ac-tccgaacagatcggacaaactagagaagattcatccagttgacaaagggaaaaaa 25232018  T

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Target: chr5; HSP #8
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 188 - 345
Target Start/End: Complemental strand, 25296332 - 25296176
Alignment:
Q  188 aaggttatgcatttccggtggaaattgaatacgaggggctgcctgacttttgcactcactgtaaaagtattggacataatataacatcttgctggtggtt 287  Q
    |||||||||||||||| |  ||||||||||||||||| |||||||| ||||||| ||| |||||||||||||| |||||| ||| |||||| ||||||||    
T  25296332 aaggttatgcatttccagcagaaattgaatacgagggactgcctgagttttgcattcattgtaaaagtattggccataatgtaaaatcttgttggtggtt 25296233  T
Q  288 acatccnnnnnnntcagacaaactagagaaggttcttccaattaataaagggaaaaaa 345  Q
    || |||       || ||||||||||||||| ||| |||| || | ||||||||||||    
T  25296232 ac-tccgaacagatcggacaaactagagaagattcatccagttgacaaagggaaaaaa 25296176  T

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Target: chr5; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 21 - 151
Target Start/End: Complemental strand, 25232314 - 25232185
Alignment:
Q  21 acaggaatattggatggagagaaccttgtatgaaatagcaggggctatccgaactccgttgttaattgataatgttactaagaacagattgtttggtcat 120  Q
    ||||||||||||| |||||||||| ||||||||||||||| | |||||| | || ||||| ||| | ||| |||||||||||||||| |||||||||||     
T  25232314 acaggaatattgggtggagagaacattgtatgaaatagcaagagctatcgggacaccgtttttagtcgat-atgttactaagaacaggttgtttggtcac 25232216  T
Q  121 tatgccaaagttttgaaggacttagaccttt 151  Q
    |||||||| || ||   ||||||||||||||    
T  25232215 tatgccaaggtgtttgtggacttagaccttt 25232185  T

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Target: chr5; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 25 - 127
Target Start/End: Complemental strand, 25236504 - 25236402
Alignment:
Q  25 gaatattggatggagagaaccttgtatgaaatagcaggggctatccgaactccgttgttaattgataatgttactaagaacagattgtttggtcattatg 124  Q
    ||||||| ||||  |||||| ||||||||||||||| |||||||| | || ||||||||||| ||||||||||| |||||||| ||||||||||| ||||    
T  25236504 gaatattcgatgatgagaactttgtatgaaatagcatgggctatcgggacaccgttgttaatcgataatgttaccaagaacaggttgtttggtcactatg 25236405  T
Q  125 cca 127  Q
    |||    
T  25236404 cca 25236402  T

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Target: chr5; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 21 - 151
Target Start/End: Complemental strand, 25296472 - 25296343
Alignment:
Q  21 acaggaatattggatggagagaaccttgtatgaaatagcaggggctatccgaactccgttgttaattgataatgttactaagaacagattgtttggtcat 120  Q
    ||||||||||||| |||||||||| ||||||||||||||| | |||||| | || ||||| ||| | ||| |||||||||||||||| |||||||||||     
T  25296472 acaggaatattgggtggagagaacattgtatgaaatagcaagagctatcgggacaccgtttttagtcgat-atgttactaagaacaggttgtttggtcac 25296374  T
Q  121 tatgccaaagttttgaaggacttagaccttt 151  Q
    |||||||| || ||   ||||||||||||||    
T  25296373 tatgccaaggtgtttgtggacttagaccttt 25296343  T

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Target: chr5; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 25 - 127
Target Start/End: Complemental strand, 25300664 - 25300562
Alignment:
Q  25 gaatattggatggagagaaccttgtatgaaatagcaggggctatccgaactccgttgttaattgataatgttactaagaacagattgtttggtcattatg 124  Q
    ||||||| ||||  |||||| ||||||||||||||| |||||||| | || ||||||||||| ||||||||||| |||||||| ||||||||||| ||||    
T  25300664 gaatattcgatgatgagaactttgtatgaaatagcatgggctatcgggacaccgttgttaatcgataatgttaccaagaacaggttgtttggtcactatg 25300565  T
Q  125 cca 127  Q
    |||    
T  25300564 cca 25300562  T

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Target: chr3 (Bit Score: 66; Significance: 6e-29; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 203 - 412
Target Start/End: Original strand, 8225945 - 8226152
Alignment:
Q  203 cggtggaaattgaatacgaggggctgcctgacttttgcactcactgtaaaagtattggacataatataacatcttgctggtggttacatccnnnnnnntc 302  Q
    ||||||||||||||||| |||| |||||||| ||||||||||||||||||| |||||| |||||| ||||||||||| |||||||||||||        |    
T  8225945 cggtggaaattgaatacaagggactgcctgaattttgcactcactgtaaaactattggccataatgtaacatcttgccggtggttacatccaaaaaaagc 8226044  T
Q  303 agacaaactagagaaggttcttccaattaataaagggaaaaaattgaactttcgcagaagcagtccacgcaaggatcgaaaacaaaggataatccctctg 402  Q
    | |||||  ||||||| |||||||  || |||| ||||||||| ||||| |||| |||| || |||| || ||||| ||||   ||||||||||| ||||    
T  8226045 acacaaaagagagaagattcttcccgttgataaggggaaaaaactgaacattcgtagaaacaatccatgctaggatggaaa--gaaggataatccttctg 8226142  T
Q  403 gcattggctc 412  Q
     ||| |||||    
T  8226143 acataggctc 8226152  T

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Target: chr3; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 25 - 207
Target Start/End: Original strand, 8224440 - 8224621
Alignment:
Q  25 gaatattggatggagagaaccttgtatgaaatagcaggggctatccgaactccgttgttaattgataatgttactaagaacagattgtttggtcattatg 124  Q
    ||||||| |||||||||||  ||||||||||||||  || ||||| |||  || ||||||||||||||||||||||| |||| ||||||| |||| ||||    
T  8224440 gaatattagatggagagaaaattgtatgaaatagctagg-ctatcggaataccattgttaattgataatgttactaaaaacatattgtttagtcactatg 8224538  T
Q  125 ccaaagttttgaaggacttagacctttttgagaaccttttttatgaagttatggtggaacgggaaggttatgcatttccggtg 207  Q
    |||  || |||  | | ||||| |||   || ||| ||||||||||||||||||||||| ||||||||||||||||| |||||    
T  8224539 ccagggtcttggtgaatttagaacttaccgaaaacattttttatgaagttatggtggaatgggaaggttatgcattttcggtg 8224621  T

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Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 22 - 243
Target Start/End: Original strand, 34516379 - 34516602
Alignment:
Q  22 caggaatattggatggagagaaccttgtatgaaatagcaggggctatccgaactccgttgttaattgataatgttactaagaacaga--ttgtttggtca 119  Q
    |||||||||| ||| |||||||| |||| | |||| ||| ||||| || | || ||||| |||||| | ||||||||| | |||| |  |||||||| ||    
T  34516379 caggaatattagattgagagaactttgtttaaaatcgcaagggctgtcgggacaccgttattaattaagaatgttactgaaaacacaggttgtttggaca 34516478  T
Q  120 ttatgccaaagttttgaaggacttagacctttttgagaaccttttttatgaagttatggtggaacgggaaggttatgcatttccggtggaaattgaatac 219  Q
     |||| ||| || |||| ||| ||||| ||||   |  || ||||||||||||| ||||||||||  |||||||  ||||| |||||||| ||||||||     
T  34516479 ctatgtcaaggtattgatggatttagatctttccaaagacattttttatgaagtgatggtggaacacgaaggtttcgcattcccggtggagattgaatat 34516578  T
Q  220 gaggggctgcctgacttttgcact 243  Q
    |||||||||||  | |||||||||    
T  34516579 gaggggctgccgtatttttgcact 34516602  T

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Target: scaffold0013 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 98295 - 98335
Alignment:
Q  25 gaatattggatggagagaaccttgtatgaaatagcaggggc 65  Q
    ||||||||||||||||||||||| |||||||| ||||||||    
T  98295 gaatattggatggagagaaccttatatgaaattgcaggggc 98335  T

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Target: scaffold0013; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 211 - 260
Target Start/End: Original strand, 98481 - 98530
Alignment:
Q  211 attgaatacgaggggctgcctgacttttgcactcactgtaaaagtattgg 260  Q
    |||||||| ||||| ||||| || ||||||||||||||||| ||||||||    
T  98481 attgaatatgagggtctgccggaattttgcactcactgtaagagtattgg 98530  T

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