View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11121_low_14 (Length: 497)
Name: NF11121_low_14
Description: NF11121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11121_low_14 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 1 - 483
Target Start/End: Original strand, 4842241 - 4842721
Alignment:
| Q |
1 |
taattggaggggtagatatgagtcgtagaaaagaaatataattctggcagtatgat-caacatactaattcgctgttagcttgacttatgaagctatgtc |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
4842241 |
taattggaggggtagatatgagtcgtagaaaagacata--attctggcagtatgattcaacatactaattcgctgttagcttgacttatgaagatatgtc |
4842338 |
T |
|
| Q |
100 |
gactaaaaaacaa--tcaacgtttcaaataatgagtcaaaaattaatttttcagcttgttgagaaggtaatctttacttattacgaaagaaagaaattgc |
197 |
Q |
| |
|
|||||||||| || ||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||| |
|
|
| T |
4842339 |
gactaaaaaataaaatcaacgtttcaaacaatgagtcaaaaattaatttttcagcttgttgaggaggtagtctttact----acgaaagaaagaaattgc |
4842434 |
T |
|
| Q |
198 |
caattttaattgaatgtatacaacacttattttttgtagatgaaatagtaactttcatacctaattcaactaacaaatgttgaaattgtaaggccgaaca |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||| ||| |||||| ||||||||| |||||| |||| ||||| |
|
|
| T |
4842435 |
caattttaattgaatgtatacaacacttatttttcgttgatgaaatagtaacttttatatctagctcaactgacaaatgttaaaattgcaaggtcgaac- |
4842533 |
T |
|
| Q |
298 |
taatgactctaattcaaacacaagaccttttaattcta-taaattaccacttcatctaa---gacaacnnnnnnntattcggagtaaaataagttagagg |
393 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||| || | |||| ||| | |||||| ||||| |||| |||||||||||||||||||| |
|
|
| T |
4842534 |
--atgactctgattcaaattcaagaccttttaattttagtggattatcaccttatctaagacgacaaaagaaaaatattaggagtaaaataagttagagg |
4842631 |
T |
|
| Q |
394 |
tgtttaattt--agtgttgtgaaaaatgagagagtgtggtgttgaggtgtagtcgtggtcagtgtgtgggctcgaattagcaatcagtaatc |
483 |
Q |
| |
|
|||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4842632 |
tgtttaatttagagtgttgtgaaaaat--gagagtgtggtgttgaggtgtagtcgtggtcagtgtgtgggctcgaattagcaatcagtaatc |
4842721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University