View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11121_low_16 (Length: 487)
Name: NF11121_low_16
Description: NF11121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11121_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 352; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 9 - 473
Target Start/End: Complemental strand, 2772114 - 2771671
Alignment:
| Q |
9 |
agatgaagagcgaactgtcttgagtttggttttatatgtaagtagctggcgaaaaggtaactttgagctgaaaccaggcccgggatccaatttagaccaa |
108 |
Q |
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| T |
2772114 |
agatgaagagtgaactgtcctgagtttggttttatatgtaagtagctggcgaaaaggtcactttgacctgaaaccaggcgcgggatccaatttagaccaa |
2772015 |
T |
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| Q |
109 |
ttaatgaagaaatgatggatgaaaccggttggctgagatacatacatatcctctcgattaacttcaaatcaactgggcctttatagttacagctagattg |
208 |
Q |
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| T |
2772014 |
ttaatgaagaaatgatggatga--------------gatacatacatatcctctcgattaacttcaaatcaactaggcctttatagttacagctagatta |
2771929 |
T |
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| Q |
209 |
tgatagtagcatcaagcttggttagcaaaataaacatattcattcgaatgaagtagttttgattattattattaccaccagggaccagtcttaaacacca |
308 |
Q |
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| T |
2771928 |
tgatagtagcatcaagcttggttagcaaaataaacatattcatttgaatgaagtagttttgattattattattaccaccag-------tcttaaacacca |
2771836 |
T |
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| Q |
309 |
caaatgtcaaaagtaggaaagaaatatcaaaacgacgtctgaatggagtccagatatggatccaaattataatacaccacaaatgacagaaatagaaaag |
408 |
Q |
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| T |
2771835 |
caaatgtcaaaagtaggaaagaaatatcaaaacgacgtctgaatggagtccagatatggatccaaattataatacaccacaaatgacagaaatagaaaag |
2771736 |
T |
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| Q |
409 |
taaaaccaacgtgcaatccacatttttcttgattgttgcaggatgcgaaggaacaattttatttg |
473 |
Q |
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| T |
2771735 |
taaaaccaacgtggaatccacatttttcttgattgttgcaggatgcgaaggaacgattttatttg |
2771671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 122 - 283
Target Start/End: Original strand, 2834837 - 2834998
Alignment:
| Q |
122 |
gatggatgaaaccggttggctgagatacatacatatcctctcgattaacttcaaatcaactgggcctttatagttacagctagattgtgatagtagcatc |
221 |
Q |
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| T |
2834837 |
gatggatgaaaccggttggctgagacgcatacatatcgtccagatttactttaaatcaactaggcgtttaaatttacagctacataacgatagtagcatc |
2834936 |
T |
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| Q |
222 |
aagcttggttagcaaaataaacatattcattcgaatgaagtagttttgattattattattac |
283 |
Q |
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| T |
2834937 |
gatcgtggttagcaaaataaaaatattcattcatatgaagtggttttgattattattattac |
2834998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 109 - 271
Target Start/End: Complemental strand, 2794504 - 2794342
Alignment:
| Q |
109 |
ttaatgaagaaatgatggatgaaaccggttggctgagatacatacatatcctctcgattaacttcaaatcaactgggcctttatagttacagctagattg |
208 |
Q |
| |
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|||||||||| ||||||||||||| ||||||||||||| |||| ||| ||||||| ||||||||||||||| | ||| |||||| ||| ||||| |
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| T |
2794504 |
ttaatgaagagatgatggatgaaagcggttggctgagacacattcatgtcctctcaattaacttcaaatcattcagttatttgtagttatagcaagatta |
2794405 |
T |
|
| Q |
209 |
tgatagtagcatcaagcttggttagcaaaataaacatattcattcgaatgaagtagttttgat |
271 |
Q |
| |
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| T |
2794404 |
tgatagtagcatcaatcttggtaagcaaagttaacatattcattcagatgaagtggttttgat |
2794342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 124 - 279
Target Start/End: Complemental strand, 2821522 - 2821357
Alignment:
| Q |
124 |
tggatgaaaccggttggctgag----atacatacatatcctctcgattaacttcaaatcaactgggcctttatagttacagctagattgtgatag----- |
214 |
Q |
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|||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||| ||| | || | |||||||| | | |||||| |
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| T |
2821522 |
tggatgaaaccggttggctgagacacatacatacatgtcctcctgattaacttcaaatcaactaggcatataaatttacagctgggtaatgatagcagca |
2821423 |
T |
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| Q |
215 |
-tagcatcaagcttggttagcaaaataaacatattcattcgaatgaagtagttttgattattatta |
279 |
Q |
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||||||||| |||| ||||| |||||||| |||||||| |||||| | |||||||||||||||| |
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| T |
2821422 |
ttagcatcaatcttgattagccgaataaacaaattcattcaaatgaaatggttttgattattatta |
2821357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 362
Target Start/End: Complemental strand, 2821309 - 2821275
Alignment:
| Q |
328 |
agaaatatcaaaacgacgtctgaatggagtccaga |
362 |
Q |
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| T |
2821309 |
agaaatatcaaaaagacgtctgaatggagtccaga |
2821275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 365
Target Start/End: Complemental strand, 2800537 - 2800464
Alignment:
| Q |
292 |
accagtcttaaacaccacaaatgtcaaaagtaggaaagaaatatcaaaacgacgtctgaatggagtccagatat |
365 |
Q |
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| T |
2800537 |
accaatctgaaacaccaaaaatggcaaatgttggaaagaaatgtccaaatgatgtctgaatggagtccaaatat |
2800464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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