View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11121_low_19 (Length: 459)
Name: NF11121_low_19
Description: NF11121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11121_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 11 - 441
Target Start/End: Complemental strand, 53603374 - 53602959
Alignment:
| Q |
11 |
cacagactaagttaaggttaaaaaatacatgataaaacttgaaaatcataaaataccatcattgaaccatgaaggccaacatctgcaaggttgctgaaga |
110 |
Q |
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| T |
53603374 |
cacaaactaagttaaggttaaaaaatacatgataaaacttgaaaatcataacataccatcattgaaccatgaaggccaacatctgcaaggttgctgaaga |
53603275 |
T |
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| Q |
111 |
acgcaacaattgacgcttgagtgataatcttgctgcaaattagaatatggatggataacaattatatcacatgtaattaaaaaaccagttattaatcaca |
210 |
Q |
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| T |
53603274 |
acgcaacaattgacgcttgagtgataatcttgctgcaaattagaatatggatggataacaattatatcacatgtaattgaaaaaccagttattaatcata |
53603175 |
T |
|
| Q |
211 |
caaatatatttagttacataattaatcaaaatttatttcatagcaacaaggtagatggcactgtaatggtctttgtaataatattaagttttttaataga |
310 |
Q |
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| T |
53603174 |
caaatatatttagttacataattaatcaaaatttatttcatagcaacaaggtagatggcactg------------taataatattaagttttttaataga |
53603087 |
T |
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| Q |
311 |
aataaaaatttggttatatatctcatttgacagaaaagtaaatattgttgcttcaatacttattccaatttacagtgcaaaacaagcaaataaactaatt |
410 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
53603086 |
aataaaaatttggttatatatctcatttgatagaaaagtaaatattgttgcttcaatacttattccaatttacagtgcaaaacaagcaaataaac---tt |
53602990 |
T |
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| Q |
411 |
agtcctagataataaatttaatagtgtaaga |
441 |
Q |
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| T |
53602989 |
agtcctagataataaatttaatagtgtaaga |
53602959 |
T |
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