View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11121_low_20 (Length: 453)

Name: NF11121_low_20
Description: NF11121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11121_low_20
NF11121_low_20
[»] chr7 (19 HSPs)
chr7 (96-442)||(4817658-4818004)
chr7 (137-442)||(4785229-4785534)
chr7 (356-442)||(4862525-4862611)
chr7 (356-442)||(4698584-4698670)
chr7 (19-86)||(40521214-40521281)
chr7 (19-88)||(7298632-7298701)
chr7 (19-85)||(28949004-28949069)
chr7 (96-188)||(4698841-4698933)
chr7 (19-85)||(7298835-7298900)
chr7 (19-85)||(40521016-40521081)
chr7 (19-88)||(19804794-19804863)
chr7 (19-87)||(16979616-16979683)
chr7 (19-82)||(46567960-46568022)
chr7 (19-85)||(19805612-19805678)
chr7 (19-54)||(46568156-46568191)
chr7 (356-442)||(4713460-4713546)
chr7 (356-442)||(4854830-4854916)
chr7 (104-189)||(4862270-4862355)
chr7 (30-79)||(47478367-47478415)
[»] chr2 (20 HSPs)
chr2 (19-87)||(42028576-42028644)
chr2 (16-85)||(16115239-16115308)
chr2 (22-86)||(42028779-42028843)
chr2 (22-85)||(13280036-13280099)
chr2 (19-86)||(16115045-16115112)
chr2 (19-85)||(7317833-7317899)
chr2 (19-85)||(15332860-15332926)
chr2 (19-85)||(31860079-31860145)
chr2 (19-85)||(31860283-31860349)
chr2 (19-85)||(36059285-36059351)
chr2 (19-84)||(3671822-3671886)
chr2 (19-86)||(31470586-31470652)
chr2 (19-85)||(2059682-2059748)
chr2 (19-85)||(7317635-7317701)
chr2 (24-86)||(13279839-13279901)
chr2 (19-85)||(31470776-31470841)
chr2 (19-85)||(38085967-38086032)
chr2 (16-85)||(2059490-2059559)
chr2 (22-85)||(38086168-38086231)
chr2 (28-85)||(15330449-15330505)
[»] scaffold0214 (2 HSPs)
scaffold0214 (19-88)||(11825-11894)
scaffold0214 (19-86)||(11625-11692)
[»] chr8 (12 HSPs)
chr8 (19-87)||(2814442-2814510)
chr8 (19-88)||(14193523-14193591)
chr8 (22-88)||(37994705-37994771)
chr8 (19-85)||(37994906-37994972)
chr8 (19-85)||(41539770-41539836)
chr8 (19-85)||(41539969-41540034)
chr8 (19-85)||(397203-397269)
chr8 (19-85)||(2814243-2814308)
chr8 (19-85)||(14193324-14193389)
chr8 (19-85)||(44036814-44036880)
chr8 (19-88)||(397004-397072)
chr8 (19-69)||(25101746-25101796)
[»] chr4 (14 HSPs)
chr4 (19-86)||(3102738-3102805)
chr4 (22-85)||(40533963-40534026)
chr4 (19-85)||(40534161-40534227)
chr4 (22-85)||(3102540-3102603)
chr4 (19-85)||(5121005-5121071)
chr4 (19-85)||(11147014-11147080)
chr4 (22-84)||(13690216-13690278)
chr4 (19-88)||(9231577-9231646)
chr4 (19-85)||(18381507-18381573)
chr4 (22-85)||(37177827-37177890)
chr4 (19-85)||(18936875-18936941)
chr4 (22-85)||(18936676-18936738)
chr4 (23-66)||(9231782-9231825)
chr4 (20-85)||(37177624-37177688)
[»] chr3 (13 HSPs)
chr3 (19-86)||(27073106-27073173)
chr3 (19-85)||(33214443-33214509)
chr3 (19-88)||(36635436-36635505)
chr3 (22-86)||(33219071-33219135)
chr3 (19-85)||(33214637-33214703)
chr3 (20-85)||(19580509-19580574)
chr3 (19-83)||(10598810-10598874)
chr3 (19-78)||(36274126-36274185)
chr3 (24-85)||(27072913-27072974)
chr3 (19-82)||(36635241-36635303)
chr3 (19-85)||(36274323-36274389)
chr3 (23-85)||(10599000-10599062)
chr3 (22-88)||(11650997-11651063)
[»] scaffold0140 (1 HSPs)
scaffold0140 (19-85)||(15847-15913)
[»] chr6 (8 HSPs)
chr6 (19-85)||(33022164-33022230)
chr6 (19-84)||(7789868-7789933)
chr6 (19-84)||(33022366-33022431)
chr6 (22-85)||(21389021-21389084)
chr6 (19-82)||(21389220-21389282)
chr6 (20-74)||(7789678-7789731)
chr6 (19-84)||(28472559-28472624)
chr6 (19-84)||(29859748-29859813)
[»] chr5 (30 HSPs)
chr5 (19-85)||(791592-791658)
chr5 (19-85)||(26534696-26534762)
chr5 (19-87)||(33377846-33377914)
chr5 (24-87)||(6518201-6518264)
chr5 (19-85)||(26534506-26534572)
chr5 (16-85)||(42630711-42630780)
chr5 (19-83)||(8323906-8323970)
chr5 (20-88)||(19898953-19899021)
chr5 (19-86)||(8323706-8323773)
chr5 (19-86)||(14388518-14388584)
chr5 (19-82)||(19897228-19897290)
chr5 (19-86)||(35454450-35454516)
chr5 (19-82)||(35454648-35454710)
chr5 (19-85)||(130254-130320)
chr5 (19-85)||(5146504-5146569)
chr5 (19-85)||(5146701-5146767)
chr5 (19-85)||(14069861-14069926)
chr5 (19-86)||(130446-130513)
chr5 (19-85)||(228717-228783)
chr5 (28-86)||(791810-791868)
chr5 (19-85)||(8489123-8489189)
chr5 (19-85)||(13823346-13823412)
chr5 (19-86)||(40881791-40881856)
chr5 (22-85)||(6518404-6518466)
chr5 (19-82)||(42630905-42630968)
chr5 (24-82)||(228987-229044)
chr5 (19-85)||(13823150-13823215)
chr5 (19-68)||(40882017-40882066)
chr5 (22-82)||(27319482-27319541)
chr5 (22-54)||(27319668-27319700)
[»] chr1 (25 HSPs)
chr1 (19-85)||(10227910-10227976)
chr1 (19-88)||(50892960-50893029)
chr1 (19-87)||(10227710-10227778)
chr1 (19-81)||(19059378-19059440)
chr1 (19-85)||(23346419-23346485)
chr1 (19-85)||(28217717-28217783)
chr1 (24-86)||(48871440-48871502)
chr1 (19-86)||(26552190-26552257)
chr1 (19-85)||(7062195-7062260)
chr1 (19-85)||(48752592-48752657)
chr1 (19-85)||(48871247-48871312)
chr1 (19-85)||(50893161-50893226)
chr1 (19-86)||(42180570-42180636)
chr1 (19-85)||(28217530-28217595)
chr1 (22-84)||(50905113-50905175)
chr1 (19-84)||(39669256-39669321)
chr1 (20-76)||(23346620-23346675)
chr1 (19-87)||(41834074-41834141)
chr1 (19-86)||(4156891-4156957)
chr1 (19-77)||(19059576-19059634)
chr1 (27-83)||(26551992-26552048)
chr1 (19-87)||(41833872-41833940)
chr1 (19-54)||(7062038-7062073)
chr1 (19-84)||(50904992-50905059)
chr1 (19-54)||(42180770-42180805)
[»] scaffold0135 (2 HSPs)
scaffold0135 (19-88)||(37443-37512)
scaffold0135 (23-66)||(37648-37691)


Alignment Details
Target: chr7 (Bit Score: 283; Significance: 1e-158; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 96 - 442
Target Start/End: Complemental strand, 4818004 - 4817658
Alignment:
Q  96 attttgtaataaaatatacattcggaaattttagaaatagtggcaaatatctatcgtgcttttggattttcaatctcagaaaacaccgtagcatgaaaat 195  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  4818004 attttgtaataaaatatacattcgaaaattttagaaatagtggcaaatatctatcgtgcttttggatttccaatctcagaaaacaccgtagcatgaaaat 4817905  T
Q  196 tttatgaaaacaaaggttgttcttcagtagtggttgaattggtggtatgagacccatagtcatcactactacttgtgaaacacgtatcactcccatcatc 295  Q
    |||  ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  4817904 tttcagaaaacaaaggttgttcttcagtagaggttgaattggtggtatgagacccatagtcatcactactacttgtgaaacacatatcactcccatcatc 4817805  T
Q  296 agtaaaatgtgccaattctatcctttgcttactcttttccttttccttggtaccaacaagcttactatcctcctcactcatctccaactgcaatgcaaac 395  Q
    ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  4817804 agtaaaatgtgacaattctatcctttgctcactcttttccttttccttggtaccaacaagcttactatcctcctcactcatctctaactgcaatgcaaac 4817705  T
Q  396 tctaaagctccaacaacatcactcattgacattcgttgatgtccatc 442  Q
    ||||| |   |||| ||||||||||| ||||||||||||| ||||||    
T  4817704 tctaatgtcgcaaccacatcactcatcgacattcgttgatttccatc 4817658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 137 - 442
Target Start/End: Complemental strand, 4785534 - 4785229
Alignment:
Q  137 ggcaaatatctatcgtgcttttggattttcaatctcagaaaacaccgtagcatgaaaattttatgaaaacaaaggttgttcttcagtagtggttgaattg 236  Q
    |||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| ||||||||||    
T  4785534 ggcaaatatctatcgtgcttttggatttccattctcagaaaacaccgtagcatgaaaattttcagaaaacaaaggttgttcttcagtagaggttgaattg 4785435  T
Q  237 gtggtatgagacccatagtcatcactactacttgtgaaacacgtatcactcccatcatcagtaaaatgtgccaattctatcctttgcttactcttttcct 336  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||    
T  4785434 gtggtatgagacccatagtcatcactactacttgtgaaacacatatcactcccatcatcagtaaaatgtgacaattctatcctttgctcactcttttcct 4785335  T
Q  337 tttccttggtaccaacaagcttactatcctcctcactcatctccaactgcaatgcaaactctaaagctccaacaacatcactcattgacattcgttgatg 436  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |   |||| ||||||||||| |||||||||||||     
T  4785334 tttccttggtaccaacaagcttactatcctcctcactcatctctaactgcaatgcaaactctaatgtcgcaaccacatcactcatcgacattcgttgatt 4785235  T
Q  437 tccatc 442  Q
    ||||||    
T  4785234 tccatc 4785229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 356 - 442
Target Start/End: Original strand, 4862525 - 4862611
Alignment:
Q  356 cttactatcctcctcactcatctccaactgcaatgcaaactctaaagctccaacaacatcactcattgacattcgttgatgtccatc 442  Q
    |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  4862525 cttagtatcttcctcactcatctccaactgcaatgcaaactctaaagctccaacaacatcactcattgacattcgttgatttccatc 4862611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 356 - 442
Target Start/End: Complemental strand, 4698670 - 4698584
Alignment:
Q  356 cttactatcctcctcactcatctccaactgcaatgcaaactctaaagctccaacaacatcactcattgacattcgttgatgtccatc 442  Q
    |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||    
T  4698670 cttagtatcctcctcacttatctccaactgcaatgcaaactctaaagctccaacaacatcactcatcgacatccgttgatttccatc 4698584  T

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Target: chr7; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 40521214 - 40521281
Alignment:
Q  19 gtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctca 86  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||||    
T  40521214 gtgtcatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctca 40521281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 7298701 - 7298632
Alignment:
Q  19 gtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctcata 88  Q
    |||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||| |||||||||||    
T  7298701 gtgtcatgttttaatttgttgtttgtaaaaatgatatgttaggttcgttcctacacaagaatttctcata 7298632  T

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Target: chr7; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 28949004 - 28949069
Alignment:
Q  19 gtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctc 85  Q
    ||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  28949004 gtgtcatgttttaatttattgtttgtaagaatgata-gttaggttcgttcctacacaaaaatttctc 28949069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 96 - 188
Target Start/End: Complemental strand, 4698933 - 4698841
Alignment:
Q  96 attttgtaataaaatatacattcggaaattttagaaatagtggcaaatatctatcgtgcttttggattttcaatctcagaaaacaccgtagca 188  Q
    ||||| |||||||||||||||| |||||||||||||  ||||  || ||||||||||||| |||||||  ||||||||||||||||||| |||    
T  4698933 attttttaataaaatatacatttggaaattttagaatgagtgagaattatctatcgtgctcttggattcccaatctcagaaaacaccgttgca 4698841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 7298835 - 7298900
Alignment:
Q  19 gtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctc 85  Q
    |||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||    
T  7298835 gtgttatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaagaatttctc 7298900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 40521081 - 40521016
Alignment:
Q  19 gtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctc 85  Q
    ||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||    
T  40521081 gtgtcatattttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaagaatttctc 40521016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 19804863 - 19804794
Alignment:
Q  19 gtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctcata 88  Q
    ||||| ||||| ||||||||||||||||| || ||||||| ||||||||||||||||| |||||||||||    
T  19804863 gtgtcgtgtttcaatttgttgtttgtaaggataataggttaggttcgttcctacacaagaatttctcata 19804794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 16979616 - 16979683
Alignment:
Q  19 gtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctcat 87  Q
    |||||||||||||||||||| ||||||||||||||| ||| | ||||||||||||||| ||||||||||    
T  16979616 gtgtcatgttttaatttgttatttgtaagaatgata-gttagattcgttcctacacaagaatttctcat 16979683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 46568022 - 46567960
Alignment:
Q  19 gtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaattt 82  Q
    |||||||||||||||||||||||||||||||||||| |||  |||||||||||||||| |||||    
T  46568022 gtgtcatgttttaatttgttgtttgtaagaatgata-gttaagttcgttcctacacaagaattt 46567960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 19805612 - 19805678
Alignment:
Q  19 gtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctc 85  Q
    |||||||||||||||||||| ||| |||| ||||||||||  |||||||||||||||| ||||||||    
T  19805612 gtgtcatgttttaatttgttatttataaggatgataggttaagttcgttcctacacaagaatttctc 19805678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 54
Target Start/End: Original strand, 46568156 - 46568191
Alignment:
Q  19 gtgtcatgttttaatttgttgtttgtaagaatgata 54  Q
    ||||||||||||||||||||||||||||||||||||    
T  46568156 gtgtcatgttttaatttgttgtttgtaagaatgata 46568191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 356 - 442
Target Start/End: Complemental strand, 4713546 - 4713460
Alignment:
Q  356 cttactatcctcctcactcatctccaactgcaatgcaaactctaaagctccaacaacatcactcattgacattcgttgatgtccatc 442  Q
    ||||| ||||||| |||||||  |||| | ||| |||| ||||||||  ||||| ||||||||||| ||||||||||||| ||||||    
T  4713546 cttaccatcctccccactcataaccaatttcaacgcaagctctaaagtcccaaccacatcactcatagacattcgttgatttccatc 4713460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 356 - 442
Target Start/End: Complemental strand, 4854916 - 4854830
Alignment:
Q  356 cttactatcctcctcactcatctccaactgcaatgcaaactctaaagctccaacaacatcactcattgacattcgttgatgtccatc 442  Q
    |||||||| |||| |||||||  |||| | ||| |||| |||||||| |||||| ||||||||||| ||||| ||||||| ||||||    
T  4854916 cttactattctccccactcataaccaatttcaacgcaagctctaaagttccaaccacatcactcatagacatccgttgatttccatc 4854830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 189
Target Start/End: Original strand, 4862270 - 4862355
Alignment:
Q  104 ataaaatatacattcggaaattttagaaatagtggcaaatatctatcgtgcttttggattttcaatctcagaaaacaccgtagcat 189  Q
    |||||| |||||||   ||||||||| |  |||| ||| |||||||| |||| |||||||  | ||||||||||||||||||||||    
T  4862270 ataaaacatacatttcaaaattttaggatgagtgacaactatctatcttgctcttggattcccgatctcagaaaacaccgtagcat 4862355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 79
Target Start/End: Complemental strand, 47478415 - 47478367
Alignment:
Q  30 taatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaa 79  Q
    ||||||||||||||||||||||||| |||  ||||||| |||||||||||    
T  47478415 taatttgttgtttgtaagaatgata-gttaagttcgtttctacacaaaaa 47478367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 5e-26; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 42028644 - 42028576
Alignment:
Q  19 gtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctcat 87  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  42028644 gtgtcatgttttaatttgttgtttgtaagaatgataggttaggttcgttcctacacaagaatttctcat 42028576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 16115239 - 16115308
Alignment:
Q  16 gaagtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctc 85  Q
    |||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  16115239 gaagtgtcatattttagtttgttgtttgtaagaatgataggttaggttcgttcctacacaaaaatttctc 16115308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 22 - 86
Target Start/End: Original strand, 42028779 - 42028843
Alignment:
Q  22 tcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctca 86  Q
    |||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||    
T  42028779 tcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctca 42028843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 22 - 85
Target Start/End: Original strand, 13280036 - 13280099
Alignment:
Q  22 tcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctc 85  Q
    |||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||||    
T  13280036 tcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 13280099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 16115112 - 16115045
Alignment:
Q  19 gtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctca 86  Q
    ||||||| ||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||||    
T  16115112 gtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcttacacaaaaatttctca 16115045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 7317833 - 7317899
Alignment:
Q  19 gtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctc 85  Q
    ||||||||||||||||| ||||||||||| |||||||||| ||||||||||||||||| ||||||||    
T  7317833 gtgtcatgttttaatttattgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 7317899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 15332860 - 15332926
Alignment:
Q  19 gtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctc 85  Q
    ||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||| ||||||||    
T  15332860 gtgtcatgttttaatttattgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctc 15332926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 31860145 - 31860079
Alignment:
Q  19 gtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctc 85  Q
    |||||||||||||||||||||||| |||| |||||||||| ||||||||||||||||| ||||||||    
T  31860145 gtgtcatgttttaatttgttgtttataaggatgataggttaggttcgttcctacacaagaatttctc 31860079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 31860283 - 31860349
Alignment:
Q  19 gtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctc 85  Q
    ||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||||| ||||||||    
T  31860283 gtgtcatgttttaatttgttgtttgtaaggatggtaggttaggttcgttcctacacaagaatttctc 31860349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 36059285 - 36059351
Alignment:
Q  19 gtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctc 85  Q
    ||||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||| ||||||||    
T  36059285 gtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 36059351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 19 - 84
Target Start/End: Complemental strand, 3671886 - 3671822
Alignment:
Q  19 gtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttct 84  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||    
T  3671886 gtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaagaatttct 3671822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 31470652 - 31470586
Alignment:
Q  19 gtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctca 86  Q
    |||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||| |||||||||    
T  31470652 gtgtcatgttttaatttgttgtttgtaaaaatgata-gttaggttcgttcctacacaagaatttctca 31470586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 2059682 - 2059748
Alignment:
Q  19 gtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctc 85  Q
    ||||||| ||||||||||||||||||||| |||||||||| |||||||||| |||||| ||||||||    
T  2059682 gtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttccaacacaataatttctc 2059748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 7317701 - 7317635
Alignment:
Q  19 gtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctc 85  Q
    ||||||||||||| ||||||||| ||||| |||||||||| ||||||||||||||||||| ||||||    
T  7317701 gtgtcatgttttagtttgttgttagtaaggatgataggttaggttcgttcctacacaaaagtttctc 7317635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 24 - 86
Target Start/End: Complemental strand, 13279901 - 13279839
Alignment:
Q  24 atgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctca 86  Q
    |||||||||||||||||||||||| ||||||| || ||||||||||||||||| |||||||||    
T  13279901 atgttttaatttgttgtttgtaaggatgatagattaggttcgttcctacacaagaatttctca 13279839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 31470776 - 31470841
Alignment:
Q  19 gtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctc 85  Q
    |||||||  ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  31470776 gtgtcattatttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaaaaatttctc 31470841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 38086032 - 38085967
Alignment:
Q  19 gtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctc 85  Q
    |||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||| ||||||||    
T  38086032 gtgtcatgttttaatttgttgtttgtaagaatgata-gttagtttcgttcctacacaagaatttctc 38085967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 2059559 - 2059490
Alignment:
Q  16 gaagtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctc 85  Q
    |||||||||| ||||| ||||||||||||||| |||||||||| ||||||||||||| ||| ||||||||    
T  2059559 gaagtgtcatattttagtttgttgtttgtaaggatgataggttaggttcgttcctacccaagaatttctc 2059490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 22 - 85
Target Start/End: Original strand, 38086168 - 38086231
Alignment:
Q  22 tcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctc 85  Q
    |||| |||||||||||||||||||||||||||| ||| |||| || ||||||||||||||||||    
T  38086168 tcatattttaatttgttgtttgtaagaatgatatgttaggtttgtccctacacaaaaatttctc 38086231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 28 - 85
Target Start/End: Complemental strand, 15330505 - 15330449
Alignment:
Q  28 tttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctc 85  Q
    |||||||| |||||||||||||||||| ||| ||||||||||||||||| ||||||||    
T  15330505 tttaatttattgtttgtaagaatgata-gttaggttcgttcctacacaagaatttctc 15330449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 11825 - 11894
Alignment:
Q  19 gtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctcata 88  Q
    ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||    
T  11825 gtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctcata 11894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 11692 - 11625
Alignment:
Q  19 gtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctca 86  Q
    ||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||| |||| ||||    
T  11692 gtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaattactca 11625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 2814442 - 2814510
Alignment:
Q  19 gtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctcat 87  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||    
T  2814442 gtgtcatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctcat 2814510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 14193523 - 14193591
Alignment:
Q  19 gtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctcata 88  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||||||    
T  14193523 gtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaagaatttctcata 14193591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 22 - 88
Target Start/End: Complemental strand, 37994771 - 37994705
Alignment:
Q  22 tcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctcata 88  Q
    |||||||||||||| ||||||||||| |||||||||| ||||||||||||||||| |||||||||||    
T  37994771 tcatgttttaatttattgtttgtaaggatgataggttaggttcgttcctacacaagaatttctcata 37994705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 37994906 - 37994972
Alignment:
Q  19 gtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctc 85  Q
    ||||||||||||||||| ||||||||||| |||||||||| ||||||||||||||||| ||||||||    
T  37994906 gtgtcatgttttaatttattgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 37994972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 41539836 - 41539770
Alignment:
Q  19 gtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctc 85  Q
    ||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||    
T  41539836 gtgtcatattttaatttgttgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctc 41539770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 41539969 - 41540034
Alignment:
Q  19 gtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctc 85  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||    
T  41539969 gtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaagaatttctc 41540034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 397203 - 397269
Alignment:
Q  19 gtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctc 85  Q
    |||||||||||||||||||||||| ||||||||||| ||| |||||||| |||||||| ||||||||    
T  397203 gtgtcatgttttaatttgttgtttataagaatgatatgttaggttcgtttctacacaagaatttctc 397269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 2814308 - 2814243
Alignment:
Q  19 gtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctc 85  Q
    |||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||    
T  2814308 gtgtcatgatttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaagaatttctc 2814243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 14193389 - 14193324
Alignment:
Q  19 gtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctc 85  Q
    |||||||||||||||||||||||||||| ||| ||| ||| |||||||||||| |||||||||||||    
T  14193389 gtgtcatgttttaatttgttgtttgtaaaaataatatgttaggttcgttccta-acaaaaatttctc 14193324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 44036880 - 44036814
Alignment:
Q  19 gtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctc 85  Q
    ||||||||||| ||||||||||||||||| |||||||||| ||||||| ||||||||  ||||||||    
T  44036880 gtgtcatgtttgaatttgttgtttgtaaggatgataggttaggttcgtccctacacatgaatttctc 44036814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 397072 - 397004
Alignment:
Q  19 gtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctcata 88  Q
    |||| |||||||||||| |||||||||||||||||| ||| ||||||||||| ||||| |||||||||||    
T  397072 gtgttatgttttaatttattgtttgtaagaatgata-gttaggttcgttcctgcacaagaatttctcata 397004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 25101796 - 25101746
Alignment:
Q  19 gtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcc 69  Q
    ||||||| ||||| ||||||||||| |||||||||||||| ||||||||||    
T  25101796 gtgtcatattttattttgttgtttgcaagaatgataggttaggttcgttcc 25101746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 5e-23; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 3102738 - 3102805
Alignment:
Q  19 gtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctca 86  Q
    ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||    
T  3102738 gtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctca 3102805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 22 - 85
Target Start/End: Complemental strand, 40534026 - 40533963
Alignment:
Q  22 tcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctc 85  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  40534026 tcatgttttaatttgttgtttgtaagaatgataggttaggttcgttcctacacaagaatttctc 40533963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 40534161 - 40534227
Alignment:
Q  19 gtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctc 85  Q
    ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||||    
T  40534161 gtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 40534227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 22 - 85
Target Start/End: Complemental strand, 3102603 - 3102540
Alignment:
Q  22 tcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctc 85  Q
    |||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||||    
T  3102603 tcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 3102540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 5121005 - 5121071
Alignment:
Q  19 gtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctc 85  Q
    |||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||| ||||||||    
T  5121005 gtgtcatgttttaatttgttgtttgtaagaatgatatgttaggtttgttcctacacaagaatttctc 5121071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 11147080 - 11147014
Alignment:
Q  19 gtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctc 85  Q
    ||||||||||||||||||||||||||||||||||||  || ||||||||||||||||| ||||||||    
T  11147080 gtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgttcctacacaagaatttctc 11147014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 22 - 84
Target Start/End: Complemental strand, 13690278 - 13690216
Alignment:
Q  22 tcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttct 84  Q
    |||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |||||||    
T  13690278 tcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttct 13690216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 9231646 - 9231577
Alignment:
Q  19 gtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctcata 88  Q
    ||||||||||||||||||||||||||||| ||| |||| | ||||||||||||||||| |||||||||||    
T  9231646 gtgtcatgttttaatttgttgtttgtaaggatggtaggctaggttcgttcctacacaagaatttctcata 9231577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 18381507 - 18381573
Alignment:
Q  19 gtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctc 85  Q
    ||||||||||||||||||||| |||||||||||| | ||| ||||||||||||||||| ||||||||    
T  18381507 gtgtcatgttttaatttgttgcttgtaagaatgaaatgttaggttcgttcctacacaagaatttctc 18381573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 22 - 85
Target Start/End: Original strand, 37177827 - 37177890
Alignment:
Q  22 tcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctc 85  Q
    ||||||||||||||||||||||||||||||||| |||  ||||||||||| |||| ||||||||    
T  37177827 tcatgttttaatttgttgtttgtaagaatgatatgttatgttcgttcctagacaagaatttctc 37177890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 18936875 - 18936941
Alignment:
Q  19 gtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctc 85  Q
    ||||||||||||||||| ||||||||||||||||||  || |||||||||||| |||| ||||||||    
T  18936875 gtgtcatgttttaatttattgtttgtaagaatgatatattaggttcgttcctagacaagaatttctc 18936941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 22 - 85
Target Start/End: Complemental strand, 18936738 - 18936676
Alignment:
Q  22 tcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctc 85  Q
    ||||||||||||||||||||||||||||||||| |||  |||||||| ||||||| ||||||||    
T  18936738 tcatgttttaatttgttgtttgtaagaatgata-gttatgttcgttcatacacaagaatttctc 18936676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 23 - 66
Target Start/End: Original strand, 9231782 - 9231825
Alignment:
Q  23 catgttttaatttgttgtttgtaagaatgataggttgggttcgt 66  Q
    ||||||||||||||||||||||||| |||||||||| |||||||    
T  9231782 catgttttaatttgttgtttgtaaggatgataggttaggttcgt 9231825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 37177688 - 37177624
Alignment:
Q  20 tgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctc 85  Q
    |||||| ||||||||| ||||||||||||||||||  |||  |||||||||||| || ||||||||    
T  37177688 tgtcatattttaatttattgtttgtaagaatgata-attgaattcgttcctacagaagaatttctc 37177624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 5e-23; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 27073106 - 27073173
Alignment:
Q  19 gtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctca 86  Q
    ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||    
T  27073106 gtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctca 27073173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 33214509 - 33214443
Alignment:
Q  19 gtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctc 85  Q
    ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||||    
T  33214509 gtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 33214443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 36635436 - 36635505
Alignment:
Q  19 gtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctcata 88  Q
    |||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||| |||||||||||    
T  36635436 gtgtcatgttttaatttgttgtttgtaaaaatgatatgttaggttcgttcctacacaagaatttctcata 36635505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 33219135 - 33219071
Alignment:
Q  22 tcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctca 86  Q
    |||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||    
T  33219135 tcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctca 33219071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 33214637 - 33214703
Alignment:
Q  19 gtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctc 85  Q
    |||||||||||||||||||||||||||||  ||||||||| ||||||||||||||||| ||||||||    
T  33214637 gtgtcatgttttaatttgttgtttgtaaggttgataggttaggttcgttcctacacaagaatttctc 33214703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 19580509 - 19580574
Alignment:
Q  20 tgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctc 85  Q
    ||||||||||||||||||||||||||||||||||| ||| |||||||||||| |||| ||||||||    
T  19580509 tgtcatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctatacaagaatttctc 19580574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 10598874 - 10598810
Alignment:
Q  19 gtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttc 83  Q
    ||||||||||||||||||||||||||||  |||||||||| ||||||||||||||||| ||||||    
T  10598874 gtgtcatgttttaatttgttgtttgtaaagatgataggttaggttcgttcctacacaagaatttc 10598810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 36274185 - 36274126
Alignment:
Q  19 gtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaa 78  Q
    ||||||||||||||||||||||||||||| |||||| ||| |||||||||||||||||||    
T  36274185 gtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaaaa 36274126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 24 - 85
Target Start/End: Complemental strand, 27072974 - 27072913
Alignment:
Q  24 atgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctc 85  Q
    |||||||||||||||||||||||| ||||||| || ||||||||||||||||| ||||||||    
T  27072974 atgttttaatttgttgtttgtaaggatgatagattaggttcgttcctacacaagaatttctc 27072913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 36635303 - 36635241
Alignment:
Q  19 gtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaattt 82  Q
    |||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||| |||||    
T  36635303 gtgtcatgttttaatttgttgtttgtaacaatgata-gttaggttcgttcctacacaagaattt 36635241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 36274323 - 36274389
Alignment:
Q  19 gtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctc 85  Q
    ||||||||||||||||||||||||||||  |||||||||| | |||||||||||| || ||||||||    
T  36274323 gtgtcatgttttaatttgttgtttgtaaagatgataggttagattcgttcctacataagaatttctc 36274389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 23 - 85
Target Start/End: Original strand, 10599000 - 10599062
Alignment:
Q  23 catgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctc 85  Q
    ||||||||||||||||||||||||| |||||| ||| |||||||| | |||||| ||||||||    
T  10599000 catgttttaatttgttgtttgtaaggatgatatgttaggttcgtttccacacaagaatttctc 10599062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 22 - 88
Target Start/End: Complemental strand, 11651063 - 11650997
Alignment:
Q  22 tcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctcata 88  Q
    |||| |||||| ||||||||||||||||||||| ||| ||||||||| || |||| |||||||||||    
T  11651063 tcatattttaaattgttgtttgtaagaatgatatgttaggttcgttcataaacaagaatttctcata 11650997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 15913 - 15847
Alignment:
Q  19 gtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctc 85  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||    
T  15913 gtgtcatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctc 15847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 33022230 - 33022164
Alignment:
Q  19 gtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctc 85  Q
    ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||||    
T  33022230 gtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaataatttctc 33022164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 19 - 84
Target Start/End: Original strand, 7789868 - 7789933
Alignment:
Q  19 gtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttct 84  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||| |||||||    
T  7789868 gtgtcatgttttaatttgttgtttgtaagaatgatatgttaggttcattcctacacaagaatttct 7789933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 19 - 84
Target Start/End: Original strand, 33022366 - 33022431
Alignment:
Q  19 gtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttct 84  Q
    ||||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||| |||||||    
T  33022366 gtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttct 33022431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 22 - 85
Target Start/End: Complemental strand, 21389084 - 21389021
Alignment:
Q  22 tcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctc 85  Q
    ||||||||||||||||||||||||||||||||| ||| |||||||||||||| || ||||||||    
T  21389084 tcatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacagaagaatttctc 21389021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 21389220 - 21389282
Alignment:
Q  19 gtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaattt 82  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||    
T  21389220 gtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaagaattt 21389282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 20 - 74
Target Start/End: Complemental strand, 7789731 - 7789678
Alignment:
Q  20 tgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacac 74  Q
    ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||    
T  7789731 tgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacac 7789678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 19 - 84
Target Start/End: Original strand, 28472559 - 28472624
Alignment:
Q  19 gtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttct 84  Q
    |||| ||| ||||||||||||||| ||| |||||||  || |||||||||||||| ||||||||||    
T  28472559 gtgttatgatttaatttgttgtttataaaaatgatatattaggttcgttcctacataaaaatttct 28472624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 19 - 84
Target Start/End: Original strand, 29859748 - 29859813
Alignment:
Q  19 gtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttct 84  Q
    |||| ||| ||||||||||||||| ||| |||||||  || |||||||||||||| ||||||||||    
T  29859748 gtgttatgatttaatttgttgtttataaaaatgatatattaggttcgttcctacataaaaatttct 29859813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 791658 - 791592
Alignment:
Q  19 gtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctc 85  Q
    ||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||    
T  791658 gtgtcatgttttaatttgttgtttgtaaggatggtaggttaggttcgttcctacacaaaaatttctc 791592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 26534696 - 26534762
Alignment:
Q  19 gtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctc 85  Q
    ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||||    
T  26534696 gtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 26534762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 33377846 - 33377914
Alignment:
Q  19 gtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctcat 87  Q
    |||||||||||||||||||||||||||||||||||| ||| |||||||||||||| || ||||||||||    
T  33377846 gtgtcatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacataagaatttctcat 33377914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 24 - 87
Target Start/End: Complemental strand, 6518264 - 6518201
Alignment:
Q  24 atgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctcat 87  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||    
T  6518264 atgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctcat 6518201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 26534572 - 26534506
Alignment:
Q  19 gtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctc 85  Q
    |||||||||||||||||||||||||||||  ||||||||| ||||||||||||||||| ||||||||    
T  26534572 gtgtcatgttttaatttgttgtttgtaaggttgataggttaggttcgttcctacacaagaatttctc 26534506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 42630780 - 42630711
Alignment:
Q  16 gaagtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctc 85  Q
    |||||||||||||||| ||||||||||||||| |||||||||| ||||||||| ||||||| ||||||||    
T  42630780 gaagtgtcatgttttagtttgttgtttgtaaggatgataggttaggttcgttcatacacaagaatttctc 42630711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 8323906 - 8323970
Alignment:
Q  19 gtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttc 83  Q
    ||||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||| ||||||    
T  8323906 gtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttc 8323970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 19898953 - 19899021
Alignment:
Q  20 tgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctcata 88  Q
    ||||||||||||||||||||||| ||| ||||||| ||| ||||||||||||||||| |||||||||||    
T  19898953 tgtcatgttttaatttgttgtttataaaaatgatatgttaggttcgttcctacacaagaatttctcata 19899021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 8323773 - 8323706
Alignment:
Q  19 gtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctca 86  Q
    ||||||||||||||||| ||||||||||  |||||||||| ||||||||||||||||| |||||||||    
T  8323773 gtgtcatgttttaatttattgtttgtaaagatgataggttaggttcgttcctacacaagaatttctca 8323706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 14388518 - 14388584
Alignment:
Q  19 gtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctca 86  Q
    |||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||| |||||||||    
T  14388518 gtgtcatgttttaatttgttgtttgtaagaatgata-gttaggtttgttcctacacaagaatttctca 14388584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 19897290 - 19897228
Alignment:
Q  19 gtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaattt 82  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||    
T  19897290 gtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaataattt 19897228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 35454516 - 35454450
Alignment:
Q  19 gtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctca 86  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||| |||||||||    
T  35454516 gtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcatacacaagaatttctca 35454450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 35454648 - 35454710
Alignment:
Q  19 gtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaattt 82  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||    
T  35454648 gtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaagaattt 35454710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 130320 - 130254
Alignment:
Q  19 gtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctc 85  Q
    |||||||||||||||||||||||||||||  ||| ||||| ||||||||||||||||| ||||||||    
T  130320 gtgtcatgttttaatttgttgtttgtaaggttgacaggttaggttcgttcctacacaagaatttctc 130254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 5146569 - 5146504
Alignment:
Q  19 gtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctc 85  Q
    ||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||| ||||||||    
T  5146569 gtgtcatgttttaatttattgtttgtaagaatgata-gttaggttcgttcctacacaataatttctc 5146504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 5146701 - 5146767
Alignment:
Q  19 gtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctc 85  Q
    ||||||||||||||||||||||||||||||||||||  || |||||||| |||||||| ||||||||    
T  5146701 gtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgtttctacacaagaatttctc 5146767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 14069926 - 14069861
Alignment:
Q  19 gtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctc 85  Q
    |||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||| ||||||||    
T  14069926 gtgtcatgttttaatttgttgtttataagaatgata-gttaggttcgttcctacacaagaatttctc 14069861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 130446 - 130513
Alignment:
Q  19 gtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctca 86  Q
    |||| |||||||||||||||||||||||| |||||||||| |||||||| ||||| || |||||||||    
T  130446 gtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttactacaaaagaatttctca 130513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 228783 - 228717
Alignment:
Q  19 gtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctc 85  Q
    ||||||||||||||||| |||||| ||||||||||| ||| ||||||||||||||||  ||||||||    
T  228783 gtgtcatgttttaatttattgtttataagaatgatatgttaggttcgttcctacacagtaatttctc 228717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 28 - 86
Target Start/End: Original strand, 791810 - 791868
Alignment:
Q  28 tttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctca 86  Q
    |||||||||||||||||||  |||||||||| ||||||||||||||||| |||||||||    
T  791810 tttaatttgttgtttgtaaagatgataggttaggttcgttcctacacaagaatttctca 791868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 8489189 - 8489123
Alignment:
Q  19 gtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctc 85  Q
    ||||||| |||||||||||||||||||||||||||| ||| | || |||||||||||| ||||||||    
T  8489189 gtgtcatattttaatttgttgtttgtaagaatgatatgttagatttgttcctacacaagaatttctc 8489123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 13823346 - 13823412
Alignment:
Q  19 gtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctc 85  Q
    |||||||||||||||||||| ||||||| ||||||| |||  |||||||||||||||| ||||||||    
T  13823346 gtgtcatgttttaatttgttatttgtaaaaatgatatgttaagttcgttcctacacaagaatttctc 13823412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 40881856 - 40881791
Alignment:
Q  19 gtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctca 86  Q
    ||||||||||||||||| |||||||||||||| ||  ||| ||||||||||||||||| |||||||||    
T  40881856 gtgtcatgttttaatttattgtttgtaagaataat--gttaggttcgttcctacacaacaatttctca 40881791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 22 - 85
Target Start/End: Original strand, 6518404 - 6518466
Alignment:
Q  22 tcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctc 85  Q
    |||| |||||||||||||||||||||||||||| ||| |||||||| |||||||| ||||||||    
T  6518404 tcatattttaatttgttgtttgtaagaatgata-gttaggttcgttactacacaagaatttctc 6518466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 42630905 - 42630968
Alignment:
Q  19 gtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaattt 82  Q
    ||||||| ||||||||| ||||||||||| |||||||||| ||||||| ||||||||| |||||    
T  42630905 gtgtcatattttaatttattgtttgtaaggatgataggttaggttcgtgcctacacaagaattt 42630968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 228987 - 229044
Alignment:
Q  24 atgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaattt 82  Q
    ||||||||||||||||||||||||||||||| |||  ||||||| ||||||||||||||    
T  228987 atgttttaatttgttgtttgtaagaatgata-gttatgttcgtttctacacaaaaattt 229044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 13823215 - 13823150
Alignment:
Q  19 gtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctc 85  Q
    ||||||||||||| ||| |||||| || ||||||||| || ||||||||||||||||| ||||||||    
T  13823215 gtgtcatgttttagtttattgtttatacgaatgatag-ttaggttcgttcctacacaagaatttctc 13823150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 40882017 - 40882066
Alignment:
Q  19 gtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttc 68  Q
    ||||||| |||||||||||||||||||||||||||| ||| | |||||||    
T  40882017 gtgtcatattttaatttgttgtttgtaagaatgatatgttagattcgttc 40882066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 82
Target Start/End: Complemental strand, 27319541 - 27319482
Alignment:
Q  22 tcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaattt 82  Q
    |||||||||||||| || ||||||||||||||| |||  |||| || ||||||||||||||    
T  27319541 tcatgttttaatttattatttgtaagaatgata-gttaagttcattactacacaaaaattt 27319482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 54
Target Start/End: Original strand, 27319668 - 27319700
Alignment:
Q  22 tcatgttttaatttgttgtttgtaagaatgata 54  Q
    |||| ||||||||||||||||||||||||||||    
T  27319668 tcatattttaatttgttgtttgtaagaatgata 27319700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 10227910 - 10227976
Alignment:
Q  19 gtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctc 85  Q
    ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||||    
T  10227910 gtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 10227976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 50893029 - 50892960
Alignment:
Q  19 gtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctcata 88  Q
    |||||||||||||||||||||||||||||||||||| |||  ||||||| ||||||||||||||||||||    
T  50893029 gtgtcatgttttaatttgttgtttgtaagaatgatatgttaagttcgttgctacacaaaaatttctcata 50892960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 10227778 - 10227710
Alignment:
Q  19 gtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctcat 87  Q
    ||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||||| ||||||||||    
T  10227778 gtgtcatgttttaatttgttgtttgtaaggatggtaggttaggttcgttcctacacaagaatttctcat 10227710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 19059440 - 19059378
Alignment:
Q  19 gtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatt 81  Q
    ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||    
T  19059440 gtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatt 19059378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 23346485 - 23346419
Alignment:
Q  19 gtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctc 85  Q
    ||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||| ||||||||    
T  23346485 gtgtcatgttttaatttattgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctc 23346419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 28217717 - 28217783
Alignment:
Q  19 gtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctc 85  Q
    |||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||    
T  28217717 gtgtcatgttttgatttgttgtttgtaagaatgatatgttaggttcgttcctacacaataatttctc 28217783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 24 - 86
Target Start/End: Original strand, 48871440 - 48871502
Alignment:
Q  24 atgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctca 86  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||||    
T  48871440 atgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctca 48871502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 26552190 - 26552257
Alignment:
Q  19 gtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctca 86  Q
    ||||||| ||||||||||||||||||||| |||||||||| |||||| |||||||||| |||||||||    
T  26552190 gtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgatcctacacaagaatttctca 26552257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 7062195 - 7062260
Alignment:
Q  19 gtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctc 85  Q
    ||||||| |||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||    
T  7062195 gtgtcatattttaatttgttgtttgtaaaaatgata-gttaggttcgttcctacacaaaaatttctc 7062260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 48752592 - 48752657
Alignment:
Q  19 gtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctc 85  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||| ||||||||    
T  48752592 gtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcatacacaagaatttctc 48752657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 48871312 - 48871247
Alignment:
Q  19 gtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctc 85  Q
    |||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||| ||||||||    
T  48871312 gtgtcatgttttaatttgttatttgtaagaatgata-gttaggttcgttcctacacaagaatttctc 48871247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 50893161 - 50893226
Alignment:
Q  19 gtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctc 85  Q
    |||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||| ||||||||    
T  50893161 gtgtcatgttttaatttgttgtttgtaataatgata-gttaggttcgttcctacacaagaatttctc 50893226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 42180636 - 42180570
Alignment:
Q  19 gtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctca 86  Q
    |||||||||||||||||||||||||||| |||| || ||| ||||||||||||||||| |||||||||    
T  42180636 gtgtcatgttttaatttgttgtttgtaataatgcta-gttaggttcgttcctacacaagaatttctca 42180570  T

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Target: chr1; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 28217595 - 28217530
Alignment:
Q  19 gtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctc 85  Q
    ||||||||||||||||||||||||||||||||||||  || ||||||||||||||||  ||||||||    
T  28217595 gtgtcatgttttaatttgttgtttgtaagaatgata-attaggttcgttcctacacaggaatttctc 28217530  T

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Target: chr1; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 22 - 84
Target Start/End: Original strand, 50905113 - 50905175
Alignment:
Q  22 tcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttct 84  Q
    ||||||||||||||||||||||||||||||||| ||| | ||||||  |||||||||||||||    
T  50905113 tcatgttttaatttgttgtttgtaagaatgatatgttagattcgtttttacacaaaaatttct 50905175  T

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Target: chr1; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 19 - 84
Target Start/End: Original strand, 39669256 - 39669321
Alignment:
Q  19 gtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttct 84  Q
    |||||||||||||||||||| ||||||||||||||| |||  ||||||| |||||||| |||||||    
T  39669256 gtgtcatgttttaatttgttctttgtaagaatgatatgttaagttcgtttctacacaagaatttct 39669321  T

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Target: chr1; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 23346620 - 23346675
Alignment:
Q  20 tgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaa 76  Q
    |||||||||||||||| |||||||||||||||||| ||| |||||||||||||||||    
T  23346620 tgtcatgttttaatttattgtttgtaagaatgata-gttaggttcgttcctacacaa 23346675  T

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Target: chr1; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 41834074 - 41834141
Alignment:
Q  19 gtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctcat 87  Q
    |||||||||||||||||||||||||||| |||| || |||  |||||||||||||||| ||||||||||    
T  41834074 gtgtcatgttttaatttgttgtttgtaataatgcta-gttatgttcgttcctacacaagaatttctcat 41834141  T

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Target: chr1; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 4156957 - 4156891
Alignment:
Q  19 gtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctca 86  Q
    ||||||||||||||||| || ||||||||||||||| ||| ||||| ||||||||||| |||||||||    
T  4156957 gtgtcatgttttaatttattatttgtaagaatgata-gttaggttccttcctacacaagaatttctca 4156891  T

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Target: chr1; HSP #20
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 19059576 - 19059634
Alignment:
Q  19 gtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaa 77  Q
    ||||||| |||||||||||| ||| |||| |||||||||| ||||||||||||||||||    
T  19059576 gtgtcatattttaatttgttctttataaggatgataggttaggttcgttcctacacaaa 19059634  T

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Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 26552048 - 26551992
Alignment:
Q  27 ttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttc 83  Q
    ||||||||| ||||||||||| |||||||||| | ||||||||||||||| ||||||    
T  26552048 ttttaattttttgtttgtaaggatgataggttagattcgttcctacacaagaatttc 26551992  T

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Target: chr1; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 41833940 - 41833872
Alignment:
Q  19 gtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctcat 87  Q
    |||||||||||||||||||||| |||||||||||||  || | |||||| ||| |||| ||||||||||    
T  41833940 gtgtcatgttttaatttgttgtgtgtaagaatgatatattagattcgtttctatacaagaatttctcat 41833872  T

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Target: chr1; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 54
Target Start/End: Complemental strand, 7062073 - 7062038
Alignment:
Q  19 gtgtcatgttttaatttgttgtttgtaagaatgata 54  Q
    ||||||||||||||||||||||||||||||||||||    
T  7062073 gtgtcatgttttaatttgttgtttgtaagaatgata 7062038  T

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Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 84
Target Start/End: Complemental strand, 50905059 - 50904992
Alignment:
Q  19 gtgtcatgttttaatttgttgtttgtaagaatgataggt--tgggttcgttcctacacaaaaatttct 84  Q
    |||||||||||||| ||||||||||||| |||||||  |  | ||||||||||||||||| |||||||    
T  50905059 gtgtcatgttttaacttgttgtttgtaaaaatgatatatattaggttcgttcctacacaagaatttct 50904992  T

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Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 54
Target Start/End: Original strand, 42180770 - 42180805
Alignment:
Q  19 gtgtcatgttttaatttgttgtttgtaagaatgata 54  Q
    ||||||||||||| ||||||||||||||||||||||    
T  42180770 gtgtcatgttttagtttgttgtttgtaagaatgata 42180805  T

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Target: scaffold0135 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 37512 - 37443
Alignment:
Q  19 gtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctcata 88  Q
    ||||||||||||||||||||||||||||| ||| |||| | ||||||||||||||||| |||||||||||    
T  37512 gtgtcatgttttaatttgttgtttgtaaggatggtaggctaggttcgttcctacacaagaatttctcata 37443  T

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Target: scaffold0135; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 23 - 66
Target Start/End: Original strand, 37648 - 37691
Alignment:
Q  23 catgttttaatttgttgtttgtaagaatgataggttgggttcgt 66  Q
    ||||||||||||||||||||||||| |||||||||| |||||||    
T  37648 catgttttaatttgttgtttgtaaggatgataggttaggttcgt 37691  T

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