View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11121_low_23 (Length: 434)
Name: NF11121_low_23
Description: NF11121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11121_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 324; Significance: 0; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 328
Target Start/End: Original strand, 39848262 - 39848589
Alignment:
| Q |
1 |
aagtatcagcttgatataaatgacatgagcagattcaacatgtaacataaatgaggggtaaaagtcataaattatgaagcttaaagcagatatataagca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39848262 |
aagtatcagcttgatataaatgacatgagcagattcaacatgtaacataaatgaggggtaaaagtcataaattatgaagcttaaagcagatatataagca |
39848361 |
T |
|
| Q |
101 |
acaatcagagatgaaaaagtcataaattatgatgcttaaagcggctatatgagcaaaacaatattgaaaagtttcaagcaattttgtgaatttacagatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39848362 |
acaatcagagatgaaaaagtcataaattatgatgcttaaagcggctatatgagcaaaacaatattgaaaagtttcaagcaattttgtgaatttacagatt |
39848461 |
T |
|
| Q |
201 |
gtgcttcatcgatgtgtgtcaaaagccgagatggtcgacatgtatggttttcacgcttttcccataaccaaaagcgcgggaattgagctggtatgccaaa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
39848462 |
gtgcttcatcgatgtgtgtcaaaagccgagatggtcgacatgtatggttttcacgcttttcccataaccaaaagcgctggaattgagctggtatgccaaa |
39848561 |
T |
|
| Q |
301 |
ctctttagcaacattttcctacatatca |
328 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
39848562 |
ctctttagcaacattttcctacatatca |
39848589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 99 - 312
Target Start/End: Original strand, 39858114 - 39858327
Alignment:
| Q |
99 |
caacaatcagagatgaaaaagtcataaattatgatgcttaaagcggctatatgagcaaaacaatattgaaaagtttcaagcaattttgtgaatttacaga |
198 |
Q |
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|||||| ||||||||||||||||||||| ||||| |||| ||| || ||||||||||||||||||||||||| |||||||||| | |||| ||||||| |
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| T |
39858114 |
caacaaccagagatgaaaaagtcataaaatatgaagcttgaaggggatatatgagcaaaacaatattgaaaaacttcaagcaatctcatgaacttacaga |
39858213 |
T |
|
| Q |
199 |
ttgtgcttcatcgatgtgtgtcaaaagccgagatggtcgacatgtatggttttcacgcttttcccataaccaaaagcgcgggaattgagctggtatgcca |
298 |
Q |
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|| |||||| ||||||| ||||||| ||||| |||||||| ||||| |||| ||||||||| ||| | |||||||||| ||||||||||| |||||||| |
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| T |
39858214 |
ttttgcttcctcgatgtatgtcaaaggccgatatggtcgatatgtaccgtttacacgctttttccaaatccaaaagcgctggaattgagctagtatgcca |
39858313 |
T |
|
| Q |
299 |
aactctttagcaac |
312 |
Q |
| |
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|||||| ||||||| |
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| T |
39858314 |
aactctctagcaac |
39858327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 187 - 301
Target Start/End: Original strand, 39899071 - 39899185
Alignment:
| Q |
187 |
tgaatttacagattgtgcttcatcgatgtgtgtcaaaagccgagatggtcgacatgtatggttttcacgcttttcccataaccaaaagcgcgggaattga |
286 |
Q |
| |
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||||||||||| | |||||| || |||| ||||||| ||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |
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| T |
39899071 |
tgaatttacaggtcctgcttcctcaatgtttgtcaaaggccgagaaggtcgacatgtatggttttgacgcttttcccataaccaaaagcgctggaattga |
39899170 |
T |
|
| Q |
287 |
gctggtatgccaaac |
301 |
Q |
| |
|
||||||||||||||| |
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|
| T |
39899171 |
gctggtatgccaaac |
39899185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 146 - 328
Target Start/End: Original strand, 39865484 - 39865666
Alignment:
| Q |
146 |
tatatgagcaaaacaatattgaaaagtttcaagcaattttgtgaatttacagattgtgcttcatcgatgtgtgtcaaaagccgagatggtcgacatgtat |
245 |
Q |
| |
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||||| ||||||| |||||||| ||| |||||| || || ||||||||||| | |||||| || ||| ||||||| | ||| |||| |||||||||| |
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| T |
39865484 |
tatatcagcaaaataatattgataagcttcaagagatcttatgaatttacaggtcctgcttcctcaatgcgtgtcaacggacgaaatggacgacatgtat |
39865583 |
T |
|
| Q |
246 |
ggttttcacgcttttcccataaccaaaagcgcgggaattgagctggtatgccaaactctttagcaacattttcctacatatca |
328 |
Q |
| |
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||||||||||||| | ||| |||||||||| |||||||||||||||||| ||||||||||||||| | ||||||||||||| |
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| T |
39865584 |
cgttttcacgctttgcaaatacccaaaagcgctggaattgagctggtatgcaaaactctttagcaacctcttcctacatatca |
39865666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 192 - 328
Target Start/End: Original strand, 37466958 - 37467094
Alignment:
| Q |
192 |
ttacagattgtgcttcatcgatgtgtgtcaaaagccgagatggtcgacatgtatggttttcacgcttttcccataaccaaaagcgcgggaattgagctgg |
291 |
Q |
| |
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|||||||||||||||| || || |||||||| | ||| || ||| |||||||||||| ||||||| |||||| |||||||||| |||||||| | || |
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| T |
37466958 |
ttacagattgtgcttcctcaatttgtgtcaatggacgattaggacgatatgtatggttttgacgctttgcccatagccaaaagcgctggaattgaacagg |
37467057 |
T |
|
| Q |
292 |
tatgccaaactctttagcaacattttcctacatatca |
328 |
Q |
| |
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|||||| |||||||||||||| | ||||||||||||| |
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| T |
37467058 |
tatgccgaactctttagcaacctcttcctacatatca |
37467094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 189 - 328
Target Start/End: Original strand, 39912107 - 39912246
Alignment:
| Q |
189 |
aatttacagattgtgcttcatcgatgtgtgtcaaaagccgagatggtcgacatgtatggttttcacgcttttcccataaccaaaagcgcgggaattgagc |
288 |
Q |
| |
|
||||||||| | |||||| || |||| |||||| ||||| |||| ||| ||||||||||| ||||||| |||||| |||||||||| ||||| |||| |
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| T |
39912107 |
aatttacaggtgctgcttcctcaatgtatgtcaatggccgaaatggacgatatgtatggtttagacgctttgcccatagccaaaagcgctggaatcgagc |
39912206 |
T |
|
| Q |
289 |
tggtatgccaaactctttagcaacattttcctacatatca |
328 |
Q |
| |
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|||||||| |||||||| ||||| | ||||||||||||| |
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| T |
39912207 |
cggtatgccgaactctttggcaacctcttcctacatatca |
39912246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 369 - 418
Target Start/End: Original strand, 39848630 - 39848679
Alignment:
| Q |
369 |
aacagatgggtgcaataatcatcacataattcataagttataatataaat |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39848630 |
aacagatgggtgcaataatcatcacataattcataagttataatataaat |
39848679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 258 - 325
Target Start/End: Complemental strand, 38968028 - 38967961
Alignment:
| Q |
258 |
tttcccataaccaaaagcgcgggaattgagctggtatgccaaactctttagcaacattttcctacata |
325 |
Q |
| |
|
||||||||| | |||||||| |||||||||||||||||||||||||||||||||| | |||||||||| |
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|
| T |
38968028 |
tttcccatagctaaaagcgctggaattgagctggtatgccaaactctttagcaacctcttcctacata |
38967961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 39858060 - 39858110
Alignment:
| Q |
1 |
aagtatcagcttgatataaatgacatgagcagattcaacatgtaacataaa |
51 |
Q |
| |
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|||||||||||||||||| ||| |||||||||||||||||| |||||||| |
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| T |
39858060 |
aagtatcagcttgatatagatgtcatgagcagattcaacattaaacataaa |
39858110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 242 - 312
Target Start/End: Complemental strand, 36058420 - 36058350
Alignment:
| Q |
242 |
gtatggttttcacgcttttcccataaccaaaagcgcgggaattgagctggtatgccaaactctttagcaac |
312 |
Q |
| |
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|||||||||| |||||| |||| | |||||||||| | |||||| ||||||| ||||||||||| ||||| |
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| T |
36058420 |
gtatggttttgacgcttagcccacagccaaaagcgctgaaattgaactggtataccaaactcttttgcaac |
36058350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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