View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11121_low_24 (Length: 434)
Name: NF11121_low_24
Description: NF11121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11121_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 89 - 420
Target Start/End: Original strand, 25270572 - 25270903
Alignment:
| Q |
89 |
aactaaacgtgtcaaaatccttaattgccaacaaaaagactcaagtttacatctcctcttccttnnnnnnnnnnnnnngtttacatctcctctttagtag |
188 |
Q |
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| T |
25270572 |
aactaaacgtgtcaaaatccttaattgccaacaaaa-gactcaagtttacatctcctcttccttaaaaaaataaaaaagtttacatctcctctttagtag |
25270670 |
T |
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| Q |
189 |
gnnnnnnnn-gtatacatcacctctttgtgattgagaattatatttctttgatgcaaatannnnnnnattattgtttattttaattaactctatctcaat |
287 |
Q |
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| T |
25270671 |
gaaaaaaaaagtatacatcacctctttgtgattgagaattatatttctttgatgcaaatatttttttattattgtttattttaattaactctatctcaat |
25270770 |
T |
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| Q |
288 |
tttcccagaatcttcaggtaatttattgggtgagaaatattgttagaaattgtttttataacctattattgaatctaagccacgccagtatgtttgacaa |
387 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
25270771 |
tttcctagaatcttcaggtaatttattgggtgagaaatattgttagaaattgtttttataacctattattgaatctaagccacgccagtatgcttgacaa |
25270870 |
T |
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| Q |
388 |
tttccattcatgtcataattgctgctactattt |
420 |
Q |
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| T |
25270871 |
tttccattcatgtcataattggtgctactattt |
25270903 |
T |
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