View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11121_low_25 (Length: 430)
Name: NF11121_low_25
Description: NF11121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11121_low_25 |
 | |
|
| [»] scaffold0428 (2 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 350; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 20 - 424
Target Start/End: Original strand, 33269864 - 33270268
Alignment:
| Q |
20 |
gaaccaacttcattctcagtc-atgaaagcaaggtcacaactcagtaccacaattggagtttcgttgacagcatggtcacaatcatgttagttaaagatt |
118 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33269864 |
gaaccaacttcattctcagtctatgaaagcaaggtcacgactcagtaccacaattggactttcgttgacagcatggtcacaatcatgttagttaaagatt |
33269963 |
T |
|
| Q |
119 |
agaaattgtaacagacaatatgatgtagtttagatgtaatcttgaagaacggaagatgtaatgtacctttttaaatggccaattaaacttttagaaacat |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33269964 |
agaaattgtaacagacaatatgatgtagtttagatgtaatcttgaagaacggaagatgtaatgtacctttttaaatggccaattaaacttttagaaacat |
33270063 |
T |
|
| Q |
219 |
acattaaaaatgaagtttgatcatacttcgttagcgtttttaaacaaaagaaccaacttgacatgaagaaatgactaaattgacacgaaaaaagatcaag |
318 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33270064 |
acattaaaaatgaaggttgatcatacttcgttagcatttttaaacaaaagaaccaacttgacatgaagaaatgactaaattgacacgaaaaaagatcaag |
33270163 |
T |
|
| Q |
319 |
gatctgtttgaaacattaaattaagttaatggacgccaaatatagtttttcctttttagaatgtatctaaatcttaataaatgcacattccagtgtcctt |
418 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |||| |||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
33270164 |
gatctgtttgaaacattaaattaagttaaaggaccccaagtatagtttttcc-ttttagaacgtatctaaatcttaataaatgcacattccagtctcctt |
33270262 |
T |
|
| Q |
419 |
tgcttc |
424 |
Q |
| |
|
||||| |
|
|
| T |
33270263 |
ggcttc |
33270268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 115 - 337
Target Start/End: Original strand, 9164542 - 9164765
Alignment:
| Q |
115 |
gattagaaattgtaacagacaatatgatgtagtttagatgtaatcttgaagaacggaagatgtaatgtacctttttaaatggccaattaaacttttagaa |
214 |
Q |
| |
|
||||||| |||||||||| | ||||||||| |||||||||| ||||| |||| ||| |||||| ||||||||| |||||| || ||||||||| | | |
|
|
| T |
9164542 |
gattagatattgtaacagtcgctatgatgtaacttagatgtaaccttgatgaactgaatatgtaacgtaccttttaaaatggtcagctaaacttttggta |
9164641 |
T |
|
| Q |
215 |
acatacattaaaaatgaagtttgatcatacttcgttagcgtttttaaacaaaagaaccaacttgacatgaagaaatgactaaattgacacgaaaa-aaga |
313 |
Q |
| |
|
|||||||| ||||||||||||||||| ||| | ||| ||||||||||||||| |||||||||| ||||||||||||||||||||||||| |||| |||| |
|
|
| T |
9164642 |
acatacatgaaaaatgaagtttgatcctacattgttgacgtttttaaacaaaacaaccaacttgtcatgaagaaatgactaaattgacactaaaacaaga |
9164741 |
T |
|
| Q |
314 |
tcaaggatctgtttgaaacattaa |
337 |
Q |
| |
|
||||||| ||||||||||| |||| |
|
|
| T |
9164742 |
tcaaggacctgtttgaaactttaa |
9164765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 256 - 340
Target Start/End: Complemental strand, 24632963 - 24632878
Alignment:
| Q |
256 |
ttttaaacaaaagaaccaacttgacatgaagaaatgactaaattgacacgaaa-aaagatcaaggatctgtttgaaacattaaatt |
340 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||| |
|
|
| T |
24632963 |
ttttaaacaaaacaaccaacatgacatgaagaaatgactaaattgacacgaaatcaagatcaaggacctgtttgaaactttaaatt |
24632878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 259 - 352
Target Start/End: Original strand, 33384927 - 33385021
Alignment:
| Q |
259 |
taaacaaaagaaccaacttgacatgaagaaatgactaaattgacacgaaaa-aagatcaaggatctgtttgaaacattaaattaagttaatggac |
352 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| ||||||||| || |||||||| |||||||| | |||||||||||||| |||| |
|
|
| T |
33384927 |
taaacaaaactaccaacttgacatgaagaaatgactaaattaacacgaaaacaatatcaaggacttgtttgaacctttaaattaagttaaaggac |
33385021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 115 - 275
Target Start/End: Original strand, 33259248 - 33259407
Alignment:
| Q |
115 |
gattagaaattgtaacagacaatatgatgtagtttagatgtaatcttgaagaacggaagatgtaatgtacctttttaaatggccaattaaacttttagaa |
214 |
Q |
| |
|
||||||| |||||||||| |||||| ||| |||||||||| ||||| ||| ||||||| |||||||||||| |||||| || |||||| | | |
|
|
| T |
33259248 |
gattagatattgtaacagttgctatgatttagcttagatgtaaccttgatgaattgaagatgaaatgtaccttttaaaatggttggctagacttttggga |
33259347 |
T |
|
| Q |
215 |
acatacattaaaaatgaagtttgatcatacttcgttagcgtttttaaacaaaagaaccaac |
275 |
Q |
| |
|
|||||||||||||||||||| ||||| ||| | ||| || |||||||||||||||||||| |
|
|
| T |
33259348 |
acatacattaaaaatgaagtatgatcctacattgttgacg-ttttaaacaaaagaaccaac |
33259407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 273 - 352
Target Start/End: Original strand, 33280025 - 33280106
Alignment:
| Q |
273 |
aacttgacatgaagaaatgactaaattgacac-gaaaaaag-atcaaggatctgtttgaaacattaaattaagttaatggac |
352 |
Q |
| |
|
||||| |||||||||||||||||| ||||||| ||||||| | || ||| ||||||||||| |||||||||||||| |||| |
|
|
| T |
33280025 |
aacttaacatgaagaaatgactaatttgacactcaaaaaagtaccatggacctgtttgaaactttaaattaagttaaaggac |
33280106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 115 - 275
Target Start/End: Original strand, 3369 - 3527
Alignment:
| Q |
115 |
gattagaaattgtaacagacaatatgatgtagtttagatgtaatcttgaagaacggaagatgtaatgtacctttttaaatggccaattaaacttttagaa |
214 |
Q |
| |
|
||||||| |||||||||| |||||||||| |||||||||| ||||| ||| ||||||| |||||||||||| |||||| || |||||| | | |
|
|
| T |
3369 |
gattagatattgtaacagttgctatgatgtagcttagatgtaaccttgatgaattgaagatgaaatgtaccttttaaaatgg-tggctagacttttggga |
3467 |
T |
|
| Q |
215 |
acatacattaaaaatgaagtttgatcatacttcgttagcgtttttaaacaaaagaaccaac |
275 |
Q |
| |
|
|||||||||||||||||||| ||||| ||| | ||| || |||||||||||||||||||| |
|
|
| T |
3468 |
acatacattaaaaatgaagtatgatcctacattgttgacg-ttttaaacaaaagaaccaac |
3527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 273 - 352
Target Start/End: Complemental strand, 14228 - 14147
Alignment:
| Q |
273 |
aacttgacatgaagaaatgactaaattgacac-gaaaaaag-atcaaggatctgtttgaaacattaaattaagttaatggac |
352 |
Q |
| |
|
||||| |||||||||||||||||| ||||||| ||||||| | || ||| ||||||||||| |||||||||||||| |||| |
|
|
| T |
14228 |
aacttaacatgaagaaatgactaatttgacactcaaaaaagtaccatggacctgtttgaaactttaaattaagttaaaggac |
14147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 151 - 287
Target Start/End: Complemental strand, 17443765 - 17443629
Alignment:
| Q |
151 |
gatgtaatcttgaagaacggaagatgtaatgtacctttttaaatggccaattaaacttttagaaacatacattaaaaatgaagtttgatcatacttcgtt |
250 |
Q |
| |
|
||||||| ||||| |||| |||||| ||||||||||||| ||||| | || |||||| | ||||||||| |||| |||||| ||||| ||| | ||| |
|
|
| T |
17443765 |
gatgtaaccttgatgaactgaagatttaatgtaccttttagaatggtgaggtagactttttgtaacatacataaaaagtgaagtctgatcctacattgtt |
17443666 |
T |
|
| Q |
251 |
agcgtttttaaacaaaagaaccaacttgacatgaaga |
287 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||| |
|
|
| T |
17443665 |
gatgtttttaaacaaaacaaccaacttgacattaaga |
17443629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 287 - 345
Target Start/End: Complemental strand, 7516223 - 7516165
Alignment:
| Q |
287 |
aaatgactaaattgacacgaaaaaagatcaaggatctgtttgaaacattaaattaagtt |
345 |
Q |
| |
|
|||||||||| |||||||||||||||| || || ||||||||||| |||||||||||| |
|
|
| T |
7516223 |
aaatgactaatttgacacgaaaaaagacaaatgacctgtttgaaactttaaattaagtt |
7516165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 137 - 196
Target Start/End: Original strand, 41194255 - 41194314
Alignment:
| Q |
137 |
tatgatgtagtttagatgtaatcttgaagaacggaagatgtaatgtacctttttaaatgg |
196 |
Q |
| |
|
||||||||| ||||||||| ||||||| ||| ||||||||||| || |||||||||||| |
|
|
| T |
41194255 |
tatgatgtaatttagatgttatcttgatgaattgaagatgtaatttatctttttaaatgg |
41194314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University