View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11121_low_26 (Length: 426)
Name: NF11121_low_26
Description: NF11121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11121_low_26 |
 | |
|
| [»] scaffold0667 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 374; Significance: 0; HSPs: 29)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 19 - 416
Target Start/End: Original strand, 12012282 - 12012679
Alignment:
| Q |
19 |
atgtcagactcttcacctcgaaaacaaactcgtggaaagtacttcctagtatagactatgttctttgctatgctctaaccatgggggtttttgttgagaa |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
12012282 |
atgtcagactcttcacctcgaaaacaaactcgtggaaagtacttcctagtatagactatgttctttgctatgctctaaccatgggagtttttgttgagaa |
12012381 |
T |
|
| Q |
119 |
ttctcttcattggataacggtgaagaaacctgatgggttacatccccgtttaattgtcgcgtttaacctaacacttgaggttttcaatgaggttccattt |
218 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
12012382 |
ttctcttcattggataacggtgaagaatcctgatgggttacatccccgtttaattgtcgcgtttaacctaacacttgagcttttcaatgaggttccattt |
12012481 |
T |
|
| Q |
219 |
cctgatgaaataggaggtgaagaggttatttgtaatagtatttttgaaatttctgttgctgatttgggagggtgtctttgtatgattgtgaatcatcaaa |
318 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12012482 |
cctgatgaaatatgaggtgaagaggttatttgtaatagtagttttgaaatttctgttgctgatttgggagggtgtctttgtatgattgtgaatcatcaaa |
12012581 |
T |
|
| Q |
319 |
ctactaagattgatgtattggtgatgaaagaatatggttgtaaagatagttggtgtaaactttttactttggtggaatcgtgttttgttttacctttg |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
12012582 |
ctactaagattgatgtattggtgatgaaagaatatggttgtaaagatagttggtgtaaactttttactttggtggaatcgtgtttcgttttacctttg |
12012679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 27 - 413
Target Start/End: Original strand, 12005862 - 12006248
Alignment:
| Q |
27 |
ctcttcacctcgaaaacaaactcgtggaaagtacttcctagtatagactatgttctttgctatgctctaaccatgggggtttttgttgagaattctcttc |
126 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||||||||||| || || |||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12005862 |
ctcttcacttcgaaaacaaactcatggaaagtacttcctagcattgagtatgttatttgctatgctctaaccatgggggtttttgttgagaattctcttc |
12005961 |
T |
|
| Q |
127 |
attggataacggtgaagaaacctgatgggttacatccccgtttaattgtcgcgtttaacctaacacttgaggttttcaatgaggttccatttcctgatga |
226 |
Q |
| |
|
| ||||| | ||| |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
12005962 |
actggatgatggtcaagaaacctgatgggttacatcagcgtttaattttcgcgtttaacctaacacttgaggttttcaacgaggttccttttcctgatga |
12006061 |
T |
|
| Q |
227 |
aataggaggtgaagaggttatttgtaatagtatttttgaaatttctgttgctgatttgggagggtgtctttgtatgattgtgaatcatcaaactactaag |
326 |
Q |
| |
|
|||| ||||||||||||||||||||||| | | |||||||||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
12006062 |
aataagaggtgaagaggttatttgtaatcggagttttgaaattaatgttgctgatttgggagggtgtctttgtttgattgtgaattatcaaactactaag |
12006161 |
T |
|
| Q |
327 |
attgatgtattggtgatgaaagaatatggttgtaaagatagttggtgtaaactttttactttggtggaatcgtgttttgttttacct |
413 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||| |
|
|
| T |
12006162 |
attgatgtatgggtgatgaaagaatatggttgtaaagatagttggtgtaaactttttactttgatgggatcgtgtttcgttttacct |
12006248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 19 - 416
Target Start/End: Original strand, 11987217 - 11987620
Alignment:
| Q |
19 |
atgtcagactcttcacctcgaaaacaaactcgtggaaagtacttcctagtatagactatgttctttgctatgctctaaccatgggggtttttgttgagaa |
118 |
Q |
| |
|
|||||||||||||||||||||| || |||||||||||||||||||||| |||||| |||| ||||||| ||| |||||||| |||||||||||||| |
|
|
| T |
11987217 |
atgtcagactcttcacctcgaagacgaactcgtggaaagtacttcctaatatagagtatgctctttgccatgtaaataccatgggagtttttgttgagaa |
11987316 |
T |
|
| Q |
119 |
ttct------cttcattggataacggtgaagaaacctgatgggttacatccccgtttaattgtcgcgtttaacctaacacttgaggttttcaatgaggtt |
212 |
Q |
| |
|
|||| |||||||||| || | | || | |||| ||| || || ||||||||||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
11987317 |
ttctagttctcttcattggaaaatgacaaggagatatgataagtttcaacctttgttaattgtcgcatttaacctaacactcgaggttttcaatgaggtt |
11987416 |
T |
|
| Q |
213 |
ccatttcctgatgaaataggagg---tgaagaggttatttgtaatagtatttttgaaatttctgttgctgatttgggagggtgtctttgtatgattgtga |
309 |
Q |
| |
|
|| |||||| ||||||||||||| ||||||||||| | || | | |||||||||| |||||||| ||||||||||||||||||| ||| ||||| |
|
|
| T |
11987417 |
ccttttcctcatgaaataggaggaggtgaagaggttactaatagtgcaagttttgaaattgatgttgctgttttgggagggtgtctttgtttgactgtga |
11987516 |
T |
|
| Q |
310 |
atcatcaaactactaagattgatgtattggtgatgaaagaatatggttgtaaagatagttggtgtaaactttttactttggtggaatcgtgttttgtttt |
409 |
Q |
| |
|
||||||| ||||||||||||| | | |||||||||||||||||| |||| ||||||||||||||||||||| || ||| ||||||||||||| ||||| |
|
|
| T |
11987517 |
atcatca---tactaagattgatatttgggtgatgaaagaatatggatgtagagatagttggtgtaaacttttcacattgatggaatcgtgtttcgtttt |
11987613 |
T |
|
| Q |
410 |
acctttg |
416 |
Q |
| |
|
||||||| |
|
|
| T |
11987614 |
acctttg |
11987620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 98 - 391
Target Start/End: Original strand, 9065407 - 9065701
Alignment:
| Q |
98 |
catgggggtttttgttgagaattctcttcattggataacggtgaagaaacctgatgggttacatccccgtttaattgtcgcgtttaacctaacacttgag |
197 |
Q |
| |
|
||||||||||||||||||||||||| |||| | ||||| | |||||||| ||| |||||||||| ||||||||| || |||||||| |||||||| |
|
|
| T |
9065407 |
catgggggtttttgttgagaattctattcacttgataatgacgaagaaactagatcggttacatccttctttaattgttgcatttaacctcacacttgaa |
9065506 |
T |
|
| Q |
198 |
gttttcaat-gaggttccatttcctgatgaaataggaggtgaagaggttatttgtaatagtatttttgaaatttctgttgctgatttgggagggtgtctt |
296 |
Q |
| |
|
|||||||| |||||||| |||||| ||||||| ||||||||||||||| | ||||| | |||| |||| ||||||||| |||||||||||||||| |
|
|
| T |
9065507 |
attttcaattgaggttccccttcctgctgaaataagaggtgaagaggttaatagtaatgagagttttcaaatgactgttgctgttttgggagggtgtctt |
9065606 |
T |
|
| Q |
297 |
tgtatgattgtgaatcatcaaactactaagattgatgtattggtgatgaaagaatatggttgtaaagatagttggtgtaaactttttactttggt |
391 |
Q |
| |
|
||||||||| ||||| || |||||||||| ||||||| | |||||||||||||||||| | || |||||||||||||||||||||||||||||| |
|
|
| T |
9065607 |
tgtatgattttgaattatgaaactactaatattgatggttgggtgatgaaagaatatggatctagagatagttggtgtaaactttttactttggt |
9065701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 18 - 391
Target Start/End: Original strand, 9283925 - 9284298
Alignment:
| Q |
18 |
catgtcagactcttcacctcgaaaacaaactcgtggaaagtacttcctagtatagactatgttctttgctatgctctaaccatgggggtttttgttgaga |
117 |
Q |
| |
|
|||| ||||||||||| ||| |||||||||||||||||| || |||||| ||| ||| | ||| |||||||| | ||||||||||||||||||||| |
|
|
| T |
9283925 |
catgccagactcttcagctccaaaacaaactcgtggaaaataattcctattatgccctacactgtttactatgctcaagccatgggggtttttgttgaga |
9284024 |
T |
|
| Q |
118 |
attctcttcattggataacggtgaagaaacctgatgggttacatccccgtttaattgtcgcgtttaacctaacacttgaggttttcaatgaggttccatt |
217 |
Q |
| |
|
||||| |||| ||||||| || ||||| | |||||||| | | | |||||||||||||||||||||||||||| ||||||||||| |||||||| | |
|
|
| T |
9284025 |
attctattcactggataatggaaaagaatcttgatgggtcagacctttgtttaattgtcgcgtttaacctaacactagaggttttcaaagaggttcctct |
9284124 |
T |
|
| Q |
218 |
tcctgatgaaataggaggtgaagaggttatttgtaatagtatttttgaaatttctgttgctgatttgggagggtgtctttgtatgattgtgaatcatcaa |
317 |
Q |
| |
|
||||| || ||| ||||||| ||||| | | |||| | |||||| || ||||||| ||| ||||| |||||| |||||||||||||| ||||| |
|
|
| T |
9284125 |
tcctgctgttataagaggtgaggaggtaaataataatcagagttttgaccttgaggttgctgttttaggaggttgtcttagtatgattgtgaattatcaa |
9284224 |
T |
|
| Q |
318 |
actactaagattgatgtattggtgatgaaagaatatggttgtaaagatagttggtgtaaactttttactttggt |
391 |
Q |
| |
|
|||||||| ||||| || | |||||||||||||||||||| || |||||||||||||||| ||||||||||||| |
|
|
| T |
9284225 |
actactaaaattgacgtttgggtgatgaaagaatatggttctagagatagttggtgtaaaatttttactttggt |
9284298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 26 - 403
Target Start/End: Complemental strand, 10336228 - 10335866
Alignment:
| Q |
26 |
actcttcacctcgaaaacaaactcgtggaaagtacttcctagtatagactatgttctttgctatgctctaaccatgggggtttttgttgagaattctctt |
125 |
Q |
| |
|
|||||||| ||||||||||||||| |||||| |||||| ||| ||| |||||| |||| ||||||||||||| ||||||||||||||||||||| |
|
|
| T |
10336228 |
actcttcagctcgaaaacaaactcttggaaaacacttccggatatgccgtatattctttactatactctaaccatgggtgtttttgttgagaattctctt |
10336129 |
T |
|
| Q |
126 |
cattggataacggtgaagaaacctgatgggttacatccccgtttaattgtcgcgtttaacctaacacttgaggttttcaatgaggttccatttcctgatg |
225 |
Q |
| |
|
|| ||||||| | ||||| |||||||||||| || ||||||||| |||||||| ||| |||||||| |||||||||||||||| ||||||||| |
|
|
| T |
10336128 |
cactggataatgactccgaaacttgatgggttacaaccttgtttaattgctgcgtttaatctatcacttgagattttcaatgaggttcctcttcctgatg |
10336029 |
T |
|
| Q |
226 |
aaataggaggtgaagaggttatttgtaatagtatttttgaaatttctgttgctgatttgggagggtgtctttgtatgattgtgaatcatcaaactactaa |
325 |
Q |
| |
|
||||| ||| ||||| | |||| |||||||| |||||| ||||||||||||||||||| || ||||||| ||||||||||||| |
|
|
| T |
10336028 |
aaata---------------attagtaatgagagttttaaaatttctattgctgttttgggagggtgtctttgtttgcctgtgaattatcaaactactaa |
10335944 |
T |
|
| Q |
326 |
gattgatgtattggtgatgaaagaatatggttgtaaagatagttggtgtaaactttttactttggtggaatcgtgttt |
403 |
Q |
| |
|
|||||||| | |||||||||||||||||| |||| ||||||||||||||||| |||||||||||| |||||||||| |
|
|
| T |
10335943 |
aattgatgtttgggtgatgaaagaatatggctgtagagatagttggtgtaaacattttactttggttaaatcgtgttt |
10335866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 19 - 415
Target Start/End: Original strand, 12018612 - 12019020
Alignment:
| Q |
19 |
atgtcagactcttcacctcgaaaacaaactcgtggaaagtacttcctagtatagactatgttctttgctatgctctaaccatgggggtttttgttgagaa |
118 |
Q |
| |
|
|||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||| ||||| ||||| || ||||| |||||||||||||| |
|
|
| T |
12018612 |
atgtcagactctatacctcaaaaacgaactcgtggaaagtacttcctagtatagactatgctctttcctatgacaatacaatgggagtttttgttgagaa |
12018711 |
T |
|
| Q |
119 |
ttct------cttcattggataacggtgaagaaacctgatgggttacatccccgtttaattgtcgcgtttaacctaacacttgaggttttcaatgaggtt |
212 |
Q |
| |
|
|||| ||||||||||||| | | |||| |||| || || || ||||||||||| |||||||| ||||| || |||||||||||||| |
|
|
| T |
12018712 |
ttctaattctcttcattggataatgacaaggaaatttgataactttcaacctttgttaattgtcgcatttaacctcacactcgatattttcaatgaggtt |
12018811 |
T |
|
| Q |
213 |
ccatttcctgatgaaataggaggtgaagaggttatttgtaatagtatttttgaaatttctgttgctgatttgggagggtgtctttgtatgattgtgaatc |
312 |
Q |
| |
|
|| ||||| | ||||||||||| || |||||| | | | || | |||| ||||| ||||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
12018812 |
cctcttcctactaaaataggaggtaaaaaggttaataggagtataagttttcaaattgctgttgctgatttgggagggtgtctttgtttgattatgaatt |
12018911 |
T |
|
| Q |
313 |
atc------aaactactaagattgatgtattggtgatgaaagaatatggttgtaaagatagttggtgtaaactttttactttggtggaatcgtgttttgt |
406 |
Q |
| |
|
||| ||| ||||||||| | ||| | |||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||||| || |
|
|
| T |
12018912 |
atcgaaatcaaattactaagataggtgtttgggtgatgaaagaatatggatgtagagatagttggtgtaaactttttactttgatggaatcgtgtttcgt |
12019011 |
T |
|
| Q |
407 |
tttaccttt |
415 |
Q |
| |
|
||||||||| |
|
|
| T |
12019012 |
tttaccttt |
12019020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 100 - 416
Target Start/End: Complemental strand, 10348104 - 10347794
Alignment:
| Q |
100 |
tgggggtttttgttgagaattctcttcattggataacggtgaagaaacctgatgggttacatccccgtttaattgtcgcgtttaacctaacacttgaggt |
199 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||| | | |||||||| ||||||||||||||| ||||||||||||||||||||| |||||||| | |
|
|
| T |
10348104 |
tgggggtttttgttgagaattctattcactggattatgacgaagaaacttgatgggttacatccttctttaattgtcgcgtttaacctcacacttgaaat |
10348005 |
T |
|
| Q |
200 |
tttcaatgaggttccatttcctgatgaaataggaggtgaagaggttatttgtaatagtatttttgaaatttctgttgctgatttgggagggtgtctttgt |
299 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||||||||| |||| | || | || ||||||| || |||||||| ||||||||||||||||||| |
|
|
| T |
10348004 |
tttcaatgaggttcctcttcctgatgaaat---aggtgaagaagttaatggtgagag---ttttgaagttcatgttgctgttttgggagggtgtctttgt |
10347911 |
T |
|
| Q |
300 |
atgattgtgaatcatcaaactactaagattgatgtattggtgatgaaagaatatggttgtaaagatagttggtgtaaactttttactttggtggaatcgt |
399 |
Q |
| |
|
|| | ||| || || || |||||| |||||||| | ||| |||||||||||||| |||| ||||||||||||||||||||||||| ||| || |||| |
|
|
| T |
10347910 |
atcactgtcgattataaagatactaaaattgatgtttgggtcatgaaagaatatggatgtagagatagttggtgtaaactttttactatggctgagtcgt |
10347811 |
T |
|
| Q |
400 |
gttttgttttacctttg |
416 |
Q |
| |
|
|||| | |||||||||| |
|
|
| T |
10347810 |
gtttcgatttacctttg |
10347794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 97 - 403
Target Start/End: Original strand, 9060949 - 9061261
Alignment:
| Q |
97 |
ccatgggggtttttgttgagaattctcttcattggataacggtgaagaaacctgatgggttacatccccgtttaattgtcgcgtttaacctaacacttga |
196 |
Q |
| |
|
||||||||||||||||| ||||||||||||| ||| | | || ||||||| |||||||| | |||| | ||||||||||| |||||||| |||||||| |
|
|
| T |
9060949 |
ccatgggggtttttgttcagaattctcttcactgggttatggccaagaaacttgatgggtcatatccttggttaattgtcgcatttaacctcacacttga |
9061048 |
T |
|
| Q |
197 |
ggttttcaatgaggttccatttcctgatgaaataggaggtgaagaggttatttgtaatagtatt------tttgaaatttctgttgctgatttgggaggg |
290 |
Q |
| |
|
|||||||||||||||| |||| | |||| ||| |||||||||||||| ||||||||| | ||| ||||| |||||||| |||||| ||| |
|
|
| T |
9061049 |
aattttcaatgaggttcctcttcccgttgaattagaaggtgaagaggttaacagtaatagtaatgggagttttaaaattcgtgttgctgttttgggtggg |
9061148 |
T |
|
| Q |
291 |
tgtctttgtatgattgtgaatcatcaaactactaagattgatgtattggtgatgaaagaatatggttgtaaagatagttggtgtaaactttttactttgg |
390 |
Q |
| |
|
|||||||| ||| ||||||| || || ||||||| |||||||| | |||||||||||| ||||| | || ||||||||||||||||||||||||||||| |
|
|
| T |
9061149 |
tgtctttgcatgtctgtgaattatgaagctactaaaattgatgtttgggtgatgaaagactatggatctagagatagttggtgtaaactttttactttgg |
9061248 |
T |
|
| Q |
391 |
tggaatcgtgttt |
403 |
Q |
| |
|
| |||||||||| |
|
|
| T |
9061249 |
ttaaatcgtgttt |
9061261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 97 - 403
Target Start/End: Original strand, 8573313 - 8573625
Alignment:
| Q |
97 |
ccatgggggtttttgttgagaattctcttcattggataacggtgaagaaacctgatgggttacatccccgtttaattgtcgcgtttaacctaacacttga |
196 |
Q |
| |
|
||||||||||||||||| ||||||||||||| ||| | | || ||||||| |||||||| | |||| | ||||||||||| |||||||| |||||||| |
|
|
| T |
8573313 |
ccatgggggtttttgttcagaattctcttcactgggttatggccaagaaacttgatgggtcatatccttggttaattgtcgcatttaacctcacacttga |
8573412 |
T |
|
| Q |
197 |
ggttttcaatgaggttccatttcctgatgaaataggaggtgaagaggttatttgtaatagtatt-----tttgaaatttc-tgttgctgatttgggaggg |
290 |
Q |
| |
|
||||| | |||||||| |||||| |||| ||| |||||||||||||| ||||||||| | ||| ||||||| | |||||| |||||| ||| |
|
|
| T |
8573413 |
aattttctacgaggttcctcttcctgttgaattagaaggtgaagaggttaacagtaatagtaatgggagttttaaatttcgtcttgctgttttgggtggg |
8573512 |
T |
|
| Q |
291 |
tgtctttgtatgattgtgaatcatcaaactactaagattgatgtattggtgatgaaagaatatggttgtaaagatagttggtgtaaactttttactttgg |
390 |
Q |
| |
|
|||||||||||| ||||||| || |||| ||| | |||||||| | |||||||||||||||||||| || ||||||||||||||||||||||||||| | |
|
|
| T |
8573513 |
tgtctttgtatgtctgtgaattatgaaaccactgaaattgatgtttgggtgatgaaagaatatggttctagagatagttggtgtaaactttttactttcg |
8573612 |
T |
|
| Q |
391 |
tggaatcgtgttt |
403 |
Q |
| |
|
| |||||||||| |
|
|
| T |
8573613 |
ttaaatcgtgttt |
8573625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 18 - 417
Target Start/End: Complemental strand, 10353516 - 10353117
Alignment:
| Q |
18 |
catgtcagactcttcacctcgaaaacaaactcgtggaaagtacttcctagtatagactatgttctttgctatgctctaaccatgggggtttttgttgaga |
117 |
Q |
| |
|
|||||||||||||||| || |||||||||||| ||||||||| |||||| | | ||| ||||| ||||||| |||| ||||||||||||||||||| |
|
|
| T |
10353516 |
catgtcagactcttcagcttgaaaacaaactcatggaaagtaattcctaatttgccttattctctttactatgctttaacaatgggggtttttgttgaga |
10353417 |
T |
|
| Q |
118 |
attct------cttcattggataacggtgaagaaacctgatgggttacatccccgtttaattgtcgcgtttaacctaacacttgaggttttcaatgaggt |
211 |
Q |
| |
|
||||| ||||| ||| || || || |||| | | ||| || || ||||||| ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
10353416 |
attctagttctcttcactgggtagcgacgaggaaagttcaactgtttcaacctgatttaattctcgcgtttaacctaacacttgagactttcaatgaggt |
10353317 |
T |
|
| Q |
212 |
tccatttcctgatgaaataggaggtgaagaggttatttgtaatagtatttttgaaatttctgttgctgatttgggagggtgtctttgtatgattgtgaat |
311 |
Q |
| |
|
||| ||||||||||||||| ||| |||| |||| | |||| ||| ||| ||||| |||||||| ||| |||||||||||||||||||||||| || |
|
|
| T |
10353316 |
tcctcttcctgatgaaatag-agg--aagaagttaatagtaagagt---tttaaaattcgtgttgctgctttaggagggtgtctttgtatgattgtggat |
10353223 |
T |
|
| Q |
312 |
catcaaactactaagattgatgtattggtgatgaaagaatatggttgtaaagatagttggtgtaaactttttactttggtggaatcgtgttttgttttac |
411 |
Q |
| |
|
|| || |||||| |||||||| | |||||||||||||||||| |||| ||| ||||||||||||||||||||| |||| |||| | ||| | ||||| |
|
|
| T |
10353222 |
tataaagatactaaaattgatgtttgggtgatgaaagaatatggatgtagagagagttggtgtaaactttttactgtggttaaatcttctttcgatttac |
10353123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 167 - 416
Target Start/End: Complemental strand, 10372110 - 10371867
Alignment:
| Q |
167 |
tttaattgtcgcgtttaacctaacacttgaggttttcaatgaggttccatttcctgatgaaataggaggtgaagaggttatttgtaatagtatttttgaa |
266 |
Q |
| |
|
||||||| |||||||||||||| |||||||| ||||||||||||||| | ||||||||| |||| |||||| |||| | |||||||| |||||| |
|
|
| T |
10372110 |
tttaattctcgcgtttaacctatcacttgagactttcaatgaggttcctctccctgatgaactagg---tgaagaagttaatagtaatagt---tttgaa |
10372017 |
T |
|
| Q |
267 |
atttctgttgctgatttgggagggtgtctttgtatgattgtgaatcatcaaactactaagattgatgtattggtgatgaaagaatatggttgtaaagata |
366 |
Q |
| |
|
||| |||||||| ||| ||||||||||||||||||| |||| || || |||||||||| ||||| | | |||||||||||||||||||| || ||||| |
|
|
| T |
10372016 |
attcgtgttgctgttttaggagggtgtctttgtatgactgtggattataaaactactaacgttgatatttgggtgatgaaagaatatggttctagagata |
10371917 |
T |
|
| Q |
367 |
gttggtgtaaactttttactttggtggaatcgtgttttgttttacctttg |
416 |
Q |
| |
|
||||||||||||||||||||||||| |||| |||| | |||||||||| |
|
|
| T |
10371916 |
gttggtgtaaactttttactttggttaaatcaagtttgggtttacctttg |
10371867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 18 - 416
Target Start/End: Complemental strand, 9328991 - 9328608
Alignment:
| Q |
18 |
catgtcagactcttcacctcgaaaacaaactcgtggaaagtacttcctagtatagactatgttctttgctatgctctaaccatgggggtttttgttgaga |
117 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||| |||||| || ||||| ||| ||| | |||| |||||||| || || ||||||||| ||||||| |
|
|
| T |
9328991 |
catgtcagactcttcaactctaaaacaaactcttggaaaataattcctgctatgccctacgctcttgtctatgctcaaaacacgggggttttggttgaga |
9328892 |
T |
|
| Q |
118 |
attctcttcattggataacggtgaagaaacctgatgggttacatccccgtttaattgtcgcgtttaacctaacacttgaggttttcaatgaggttccatt |
217 |
Q |
| |
|
|||||||||| ||||||| | ||||||| || ||| |||||||| ||||||||| |||||||||||||||||||| ||||||||| |||||| | |
|
|
| T |
9328891 |
attctcttcactggataatgactaagaaacttggtggattacatccttctttaattgttgcgtttaacctaacacttgaaattttcaatgtggttcctct |
9328792 |
T |
|
| Q |
218 |
tcctgatgaaataggaggtgaagaggttatttgtaatagtatttttgaaatttctgttgctgatttgggagggtgtctttgtatgattgtgaatcatcaa |
317 |
Q |
| |
|
|||||||| ||| || | |||||| | |||||||||| ||||| || |||||||||||||||||| |||| | ||||| || || |
|
|
| T |
9328791 |
tcctgatgt---------tga------taatagtaataagagttttgaaattgatgttgatgttttgggagggtgtctttgcatgactttgaattatgaa |
9328707 |
T |
|
| Q |
318 |
actactaagattgatgtattggtgatgaaagaatatggttgtaaagatagttggtgtaaactttttactttggtggaatcgtgttttgttttacctttg |
416 |
Q |
| |
|
|||||| | |||||||| | |||||||||| ||||||| | || ||||||||||||||||||||||||| |||| |||||||||| |||||||||| |
|
|
| T |
9328706 |
actactgaaattgatgtttgggtgatgaaacaatatggatatagagatagttggtgtaaactttttactatggttaaatcgtgtttccatttacctttg |
9328608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #14
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 166 - 416
Target Start/End: Original strand, 7115522 - 7115775
Alignment:
| Q |
166 |
gtttaattgtcgcgtttaacctaacacttgaggttttcaatgaggttccatttcctgatgaaataggaggtgaagaggttatttgtaatagtattt---t |
262 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||| ||||||||||| | |||| || || ||| | | |
|
|
| T |
7115522 |
gtttaattgtcgcgtttaacctaacacttgagcgtttcattgaggttcctcttcctgatgaattaggaggtgaaaaagttaacagtgatggtaatggtat |
7115621 |
T |
|
| Q |
263 |
tgaaatttctgttgctgatttgggagggtgtctttgtatgattgtgaatcatcaaactactaagattgatgtattggtgatgaaagaatatggttgtaaa |
362 |
Q |
| |
|
|||| ||||| |||||| ||||||||||||||||||||||||||||||| || ||||||||| | ||||| | |||||||||| ||||||| | || | |
|
|
| T |
7115622 |
tgaactttctattgctgttttgggagggtgtctttgtatgattgtgaattatagaactactaaaacagatgtttgggtgatgaaacaatatggatctaga |
7115721 |
T |
|
| Q |
363 |
gatagttggtgtaaactttttactttggtggaatcgtgttttgttttacctttg |
416 |
Q |
| |
|
|| || ||||||||||||||||| ||||| | |||||||| | |||| ||||| |
|
|
| T |
7115722 |
gacagctggtgtaaactttttacattggttaattcgtgtttcgatttatctttg |
7115775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #15
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 97 - 391
Target Start/End: Complemental strand, 9316344 - 9316053
Alignment:
| Q |
97 |
ccatgggggtttttgttgagaattctcttcattggataacggtgaagaaacctgatgggttacatccccgtttaattgtcgcgtttaacctaacacttga |
196 |
Q |
| |
|
||||||||||||||||| ||||||||||||| ||| ||| | || || ||| | || ||| || |||| |||||||||||||||||||||||||| |
|
|
| T |
9316344 |
ccatgggggtttttgttcagaattctcttcactgggtaatgactcagcaaagtgaagagtcacacccttgtttcattgtcgcgtttaacctaacacttga |
9316245 |
T |
|
| Q |
197 |
ggttttcaatgaggttccatttcctgatgaaataggaggtgaagaggttatttgtaatagt---atttttgaaatttctgttgctgatttgggagggtgt |
293 |
Q |
| |
|
| ||||||||| |||||| |||||| |||||||| | || |||||||| | || | || | |||| ||||| ||||||||| ||||||||||||| |
|
|
| T |
9316244 |
gattttcaatgtggttcctcttcctgctgaaatagaaagtatagaggttaatagtgagtgtgagagttttcaaattgctgttgctgttttgggagggtgt |
9316145 |
T |
|
| Q |
294 |
ctttgtatgattgtgaatcatcaaactactaagattgatgtattggtgatgaaagaatatggttgtaaagatagttggtgtaaactttttactttggt |
391 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||| | |||||| | |||||||||||| ||||| | ||||||||||||||||||||||||||| |
|
|
| T |
9316144 |
ctttgtatgattttgaattatcaaactactaaaactgatgtttgggtgatgaaagactatgg------atctagttggtgtaaactttttactttggt |
9316053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #16
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 166 - 391
Target Start/End: Complemental strand, 9292178 - 9291971
Alignment:
| Q |
166 |
gtttaattgtcgcgtttaacctaacacttgaggttttcaatgaggttccatttcctgatgaaataggaggtgaagaggttatttgtaatagtatttttga |
265 |
Q |
| |
|
|||| |||||||| |||||||||||||||||| |||||||| |||||| ||||||| |||||||| |||||||||||||| |
|
|
| T |
9292178 |
gtttcattgtcgcttttaacctaacacttgagactttcaatgtggttccttttcctgctgaaatagaaggtgaagaggttac------------------ |
9292097 |
T |
|
| Q |
266 |
aatttctgttgctgatttgggagggtgtctttgtatgattgtgaatcatcaaactactaagattgatgtattggtgatgaaagaatatggttgtaaagat |
365 |
Q |
| |
|
|||| ||||||||| ||| |||| |||||||||||||| ||||||| || |||||||||| |||||||| | |||||||||| ||||||||| || |||| |
|
|
| T |
9292096 |
aattgctgttgctgttttaggagagtgtctttgtatgactgtgaattatgaaactactaaaattgatgtttgggtgatgaaacaatatggttctagagat |
9291997 |
T |
|
| Q |
366 |
agttggtgtaaactttttactttggt |
391 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
9291996 |
agttggtgtaaactttttactttggt |
9291971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #17
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 272 - 393
Target Start/End: Complemental strand, 9364781 - 9364660
Alignment:
| Q |
272 |
tgttgctgatttgggagggtgtctttgtatgattgtgaatcatcaaactactaagattgatgtattggtgatgaaagaatatggttgtaaagatagttgg |
371 |
Q |
| |
|
|||||| | |||||||||||||||| |||||||||||||| ||||||||||| | |||||||| | |||||||||||||||||| | |||||||||||| |
|
|
| T |
9364781 |
tgttgcggttttgggagggtgtcttagtatgattgtgaattatcaaactactcaaattgatgtttgggtgatgaaagaatatggattaaaagatagttgg |
9364682 |
T |
|
| Q |
372 |
tgtaaactttttactttggtgg |
393 |
Q |
| |
|
|||||| | ||||||||||||| |
|
|
| T |
9364681 |
tgtaaattgtttactttggtgg |
9364660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #18
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 87 - 227
Target Start/End: Complemental strand, 16269412 - 16269272
Alignment:
| Q |
87 |
tatgctctaaccatgggggtttttgttgagaattctcttcattggataacggtgaagaaacctgatgggttacatccccgtttaattgtcgcgtttaacc |
186 |
Q |
| |
|
||||||| || ||||||||||||||||||||||||| ||| || |||| || |||||||| ||| ||||||||||| |||||| ||||||||||||| |
|
|
| T |
16269412 |
tatgctcaaatcatgggggtttttgttgagaattctattcgctgtataatggcgaagaaacttgacgggttacatccttctttaatcgtcgcgtttaacc |
16269313 |
T |
|
| Q |
187 |
taacacttgaggttttcaatgaggttccatttcctgatgaa |
227 |
Q |
| |
|
||||||||||| ||||||| |||||||| |||||| |||| |
|
|
| T |
16269312 |
taacacttgagattttcaacgaggttcctcttcctgctgaa |
16269272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #19
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 18 - 225
Target Start/End: Complemental strand, 9321371 - 9321164
Alignment:
| Q |
18 |
catgtcagactcttcacctcgaaaacaaactcgtggaaagtacttcctagtatagactatgttctttgctatgctctaaccatgggggtttttgttgaga |
117 |
Q |
| |
|
|||||||||||||||| ||| | |||||||||||||||| || |||| ||||| || |||| |||||||| | |||||||||||||||||||| |
|
|
| T |
9321371 |
catgtcagactcttcagctctataacaaactcgtggaaaataattcccagtatgccgtactctcttatctatgctcaattcatgggggtttttgttgaga |
9321272 |
T |
|
| Q |
118 |
attctcttcattggataacggtgaagaaacctgatgggttacatccccgtttaattgtcgcgtttaacctaacacttgaggttttcaatgaggttccatt |
217 |
Q |
| |
|
|||||||||| ||||||| | ||||||| || ||| |||||||| ||||||||| || ||||||||||||||||| ||||||||| |||||| | |
|
|
| T |
9321271 |
attctcttcactggataatgacaaagaaacttggtggattacatccttctttaattgttgcatttaacctaacacttgaaattttcaatgtggttcctct |
9321172 |
T |
|
| Q |
218 |
tcctgatg |
225 |
Q |
| |
|
|||||||| |
|
|
| T |
9321171 |
tcctgatg |
9321164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #20
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 272 - 403
Target Start/End: Complemental strand, 16269242 - 16269111
Alignment:
| Q |
272 |
tgttgctgatttgggagggtgtctttgtatgattgtgaatcatcaaactactaagattgatgtattggtgatgaaagaatatggttgtaaagatagttgg |
371 |
Q |
| |
|
|||||||| ||||||||| ||||||||||| | ||||||| || |||||||||| |||||||| | |||||||||||| ||||| | || |||||||||| |
|
|
| T |
16269242 |
tgttgctgttttgggaggatgtctttgtataactgtgaattatgaaactactaaaattgatgtttgggtgatgaaagagtatggatatagagatagttgg |
16269143 |
T |
|
| Q |
372 |
tgtaaactttttactttggtggaatcgtgttt |
403 |
Q |
| |
|
|| ||||||||||| ||||| |||||||||| |
|
|
| T |
16269142 |
tgcaaactttttaccttggttaaatcgtgttt |
16269111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #21
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 260 - 395
Target Start/End: Complemental strand, 9274686 - 9274551
Alignment:
| Q |
260 |
ttttgaaatttctgttgctgatttgggagggtgtctttgtatgattgtgaatcatcaaactactaagattgatgtattggtgatgaaagaatatggttgt |
359 |
Q |
| |
|
|||||||||| ||||| || ||||| ||||||||||||||||| | ||||| ||| || |||| | |||| || | |||||||||||||||||||| | |
|
|
| T |
9274686 |
ttttgaaattaatgttgttgttttggaagggtgtctttgtatgactttgaattatcgaaatactgaatttgaagtttgggtgatgaaagaatatggttct |
9274587 |
T |
|
| Q |
360 |
aaagatagttggtgtaaactttttactttggtggaa |
395 |
Q |
| |
|
| |||||||||||||||||||||||||||| ||||| |
|
|
| T |
9274586 |
acagatagttggtgtaaactttttactttgatggaa |
9274551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #22
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 260 - 416
Target Start/End: Complemental strand, 9321144 - 9320991
Alignment:
| Q |
260 |
ttttgaaatttctgttgctgatttgggagggtgtctttgtatgattgtgaatcatcaaactactaagattgatgtattggtgatgaaagaatatggttgt |
359 |
Q |
| |
|
|||||||||| ||||| || |||||||||||||||||| |||| | || | ||||||| || ||||||| | |||||||||||||||||||| | |
|
|
| T |
9321144 |
ttttgaaattgatgttgatgttttgggagggtgtctttgcatgactt---attacgaaactacaaaagttgatgtttgggtgatgaaagaatatggttct |
9321048 |
T |
|
| Q |
360 |
aaagatagttggtgtaaactttttactttggtggaatcgtgttttgttttacctttg |
416 |
Q |
| |
|
| ||||||||||||||||||||||||| |||| ||||||||| | |||||||||| |
|
|
| T |
9321047 |
agagatagttggtgtaaactttttactatggttaaatcgtgttacgatttacctttg |
9320991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #23
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 18 - 223
Target Start/End: Complemental strand, 9274910 - 9274705
Alignment:
| Q |
18 |
catgtcagactcttcacctcgaaaacaaactcgtggaaagtacttcctagtatagactatgttctttgctatgctctaaccatgggggtttttgttgaga |
117 |
Q |
| |
|
||||| |||||||||| || ||||||||||||||||||| || |||| ||||| || | |||| |||| || | |||||||| |||||||||||| |
|
|
| T |
9274910 |
catgtgagactcttcagcttgaaaacaaactcgtggaaaataattcccagtatgccgtacgctcttaaatatgttcaagccatggggatttttgttgaga |
9274811 |
T |
|
| Q |
118 |
attctcttcattggataacggtgaagaaacctgatgggttacatccccgtttaattgtcgcgtttaacctaacacttgaggttttcaatgaggttccatt |
217 |
Q |
| |
|
|||||||||| ||| ||| | | | || ||||| || ||| || |||||||||| |||||||||||||||||||| ||||||||| |||||| | |
|
|
| T |
9274810 |
attctcttcactgggtaatgactagggaaattgatgagtcacacccttgtttaattgttgcgtttaacctaacacttgatattttcaatgtggttcctct |
9274711 |
T |
|
| Q |
218 |
tcctga |
223 |
Q |
| |
|
|||||| |
|
|
| T |
9274710 |
tcctga |
9274705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 307 - 390
Target Start/End: Complemental strand, 7612057 - 7611974
Alignment:
| Q |
307 |
tgaatcatcaaactactaagattgatgtattggtgatgaaagaatatggttgtaaagatagttggtgtaaactttttactttgg |
390 |
Q |
| |
|
||||| || |||||| |||| ||||||| | |||||||||||||||||| | |||||||||||||||||| | |||||||||| |
|
|
| T |
7612057 |
tgaattatgaaactattaagtttgatgtttgggtgatgaaagaatatggattaaaagatagttggtgtaaattgtttactttgg |
7611974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 272 - 325
Target Start/End: Original strand, 8576398 - 8576451
Alignment:
| Q |
272 |
tgttgctgatttgggagggtgtctttgtatgattgtgaatcatcaaactactaa |
325 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||| ||||||| || |||||||||| |
|
|
| T |
8576398 |
tgttgctgtttttggagggtgtctttgtatgagtgtgaattatgaaactactaa |
8576451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 312 - 388
Target Start/End: Original strand, 8579516 - 8579592
Alignment:
| Q |
312 |
catcaaactactaagattgatgtattggtgatgaaagaatatggttgtaaagatagttggtgtaaactttttacttt |
388 |
Q |
| |
|
||||| ||||||||| |||| || | |||||||||| ||||||| | || |||||||||||||||| | |||||||| |
|
|
| T |
8579516 |
catcacactactaaggttgaggtttgggtgatgaaaaaatatggatttagagatagttggtgtaaattgtttacttt |
8579592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 307 - 390
Target Start/End: Original strand, 17566107 - 17566190
Alignment:
| Q |
307 |
tgaatcatcaaactactaagattgatgtattggtgatgaaagaatatggttgtaaagatagttggtgtaaactttttactttgg |
390 |
Q |
| |
|
||||| ||||||||||||| ||||||| | |||||| ||||||||||| | || ||||| |||||||||| | ||||| |||| |
|
|
| T |
17566107 |
tgaattatcaaactactaatgttgatgtttgggtgattaaagaatatggatttagagataattggtgtaaattgtttaccttgg |
17566190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 66
Target Start/End: Original strand, 8579228 - 8579270
Alignment:
| Q |
24 |
agactcttcacctcgaaaacaaactcgtggaaagtacttccta |
66 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||||| |||||||| |
|
|
| T |
8579228 |
agactcttcagctccaaaacaaactcgtggaaagcacttccta |
8579270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 132
Target Start/End: Complemental strand, 7612280 - 7612243
Alignment:
| Q |
95 |
aaccatgggggtttttgttgagaattctcttcattgga |
132 |
Q |
| |
|
||||| |||||| ||||||||||||||||||||||||| |
|
|
| T |
7612280 |
aaccaagggggtctttgttgagaattctcttcattgga |
7612243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0667 (Bit Score: 125; Significance: 3e-64; HSPs: 1)
Name: scaffold0667
Description:
Target: scaffold0667; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 89 - 401
Target Start/End: Complemental strand, 4807 - 4495
Alignment:
| Q |
89 |
tgctctaaccatgggggtttttgttgagaattctcttcattggataacggtgaagaaacctgatgggttacatccccgtttaattgtcgcgtttaaccta |
188 |
Q |
| |
|
||||| ||||||||||||||| |||||| ||||| |||| ||||||| || ||||||| ||||||||||||||| | |||||||||| ||||||||| |
|
|
| T |
4807 |
tgctcaaaccatgggggttttggttgaggattctattcactggataatggcaaagaaacttgatgggttacatccttctctaattgtcgcttttaaccta |
4708 |
T |
|
| Q |
189 |
acacttgaggttttcaatgaggttccatttcctgatgaaataggaggtgaagaggttatttgtaatagtatttttgaaatttctgttgctgatttgggag |
288 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||| |||||||| | |||||||||| || ||| | | |||||||| |||||||| |||||||| |
|
|
| T |
4707 |
acacttgaaattttcaatgaggttcctcttcctgacgaaataggtgaagaagaggttaattcaaatgacagtgttgaaattgatgttgctgctttgggag |
4608 |
T |
|
| Q |
289 |
ggtgtctttgtatgattgtgaatcatcaaactactaagattgatgtattggtgatgaaagaatatggttgtaaagatagttggtgtaaactttttacttt |
388 |
Q |
| |
|
| ||||||||||||| ||||||| || |||||||||| |||||||| | |||||||||| ||||||| | ||||||||||||||||||||||||||| | |
|
|
| T |
4607 |
gatgtctttgtatgactgtgaattatgaaactactaaaattgatgtttgggtgatgaaacaatatggattaaaagatagttggtgtaaactttttactat |
4508 |
T |
|
| Q |
389 |
ggtggaatcgtgt |
401 |
Q |
| |
|
| || |||||||| |
|
|
| T |
4507 |
gatgaaatcgtgt |
4495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 108; Significance: 4e-54; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 26 - 391
Target Start/End: Original strand, 29467532 - 29467888
Alignment:
| Q |
26 |
actcttcacctcgaaaacaaactcgtggaaagtacttcctagtatagactatgttctttgctatgctctaaccatgggggtttttgttgagaattctctt |
125 |
Q |
| |
|
|||||||| ||||||||| ||||| |||||||||||| ||||||| || ||||| |||| ||| |||||||| |||||||||||||||||||||| |
|
|
| T |
29467532 |
actcttcagctcgaaaacgaactcctggaaagtactttctagtatgccgtactctctttactatcctcaaaccatggtggtttttgttgagaattctctt |
29467631 |
T |
|
| Q |
126 |
cattggataacggtgaagaaacctgatgggttacatccccgtttaattgtcgcgtttaacctaacacttgaggttttcaatgaggttccatttcctgatg |
225 |
Q |
| |
|
|||||||||| | |||||||| |||||||||||| | |||||||| ||||||||||||||| |||||| |||||||||||||||| |||| || |
|
|
| T |
29467632 |
cattggataatgaagaagaaacttgatgggttacaatcttgtttaattatcgcgtttaacctaaagcttgagattttcaatgaggttcctcttcc---tg |
29467728 |
T |
|
| Q |
226 |
aaataggaggtgaagaggttatttgtaatagtatttttgaaatttctgttgctgatttgggagggtgtctttgtatgattgtgaatcatcaaactactaa |
325 |
Q |
| |
|
|||| |||| | || |||| | | | || |||| ||||| |||||| | ||||||||||||||||| ||||||||||| ||||||||| ||| |
|
|
| T |
29467729 |
aaat---aggttatgaagttaatgttgagag---ttttaaaattgatgttgcggttttgggagggtgtctttagttgattgtgaattatcaaactagtaa |
29467822 |
T |
|
| Q |
326 |
gattgatgtattggtgatgaaagaatatggttgtaaagatagttggtgtaaactttttactttggt |
391 |
Q |
| |
|
|||||||| | | |||||||||||||||| |||| |||||||||| ||||||||||||||||||| |
|
|
| T |
29467823 |
aattgatgtttggttgatgaaagaatatggatgtagagatagttggcgtaaactttttactttggt |
29467888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 24 - 403
Target Start/End: Complemental strand, 29423657 - 29423287
Alignment:
| Q |
24 |
agactcttcacctcgaaaacaaactcgtggaaagtacttcctagtatagactatgttctttgctatgctctaaccatgggggtttttgttgagaattctc |
123 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |||||||| || || ||||| |||||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
29423657 |
agactcttcagctcgaaaacaaactcgtggaaagaacttcctaccatgccttacactctttactatgctcaaacaatgggggtttttgttgagaattctc |
29423558 |
T |
|
| Q |
124 |
ttcattggataacggtgaagaaacctgatgggttacatccccgtttaattgtcgcgtttaacctaacacttgaggttttcaatgaggttccatttcctga |
223 |
Q |
| |
|
|||| ||||||| | | |||||| |||| ||| | || ||| ||||||| |||||||||||||||| |||| |||||||||||||||| |||||||| |
|
|
| T |
29423557 |
ttcactggataatgacggagaaacttgatccgttgaaacctcgtgtaattgttgcgtttaacctaacacatgagattttcaatgaggttccttttcctga |
29423458 |
T |
|
| Q |
224 |
tgaaataggaggtgaagaggttatttgtaatagtatttttgaaatttctgttgctgatttgggagggtgtctttgtatgattgtgaatcatcaaactact |
323 |
Q |
| |
|
||| || |||||| || | | || | ||| ||||||||| |||||| | | ||| |||||| |||||||||| ||||||| |||||||| | |
|
|
| T |
29423457 |
---aattgg---tgaagaagtgaatagtgagagt---tttgaaattggtgttgcggttctggaagggtgcctttgtatgactgtgaattatcaaactgtt |
29423367 |
T |
|
| Q |
324 |
aagattgatgtattggtgatgaaagaatatggttgtaaagatagttggtgtaaactttttactttggtggaatcgtgttt |
403 |
Q |
| |
|
|| |||||||| | | |||||||||||||||| |||| |||||| |||||||||||||||||||||| ||||||||||| |
|
|
| T |
29423366 |
aaaattgatgtttggctgatgaaagaatatggatgtagagatagctggtgtaaactttttactttggcagaatcgtgttt |
29423287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 18 - 416
Target Start/End: Original strand, 29453048 - 29453437
Alignment:
| Q |
18 |
catgtcagactcttcacctcgaaaacaaactcgtggaaagtacttcctagtatagactatgttctttgctatgctctaaccatgggggtttttgttgaga |
117 |
Q |
| |
|
||||| |||||||||| |||||||| ||||||||||||| ||||||||||| || | ||||| |||| ||| ||| ||||||||||||||||| |
|
|
| T |
29453048 |
catgtgagactcttcagctcgaaaatgaactcgtggaaagaccttcctagtatgccgtacgctctttcctatcctcgaacagagggggtttttgttgaga |
29453147 |
T |
|
| Q |
118 |
attctcttcattggataacggtgaagaaacctgatgggttacatccccgtttaattgtcgcgtttaacctaacacttgaggttttcaatgaggttccatt |
217 |
Q |
| |
|
|||||||||| ||||||| | ||||| || | ||| || | ||| ||||||| |||||||||||||||| ||| |||||||||||||||| || |
|
|
| T |
29453148 |
attctcttcactggataatgactcggaaacttggtcagttgcaatctcgtgtaattgttgcgtttaacctaacacacgagattttcaatgaggttccttt |
29453247 |
T |
|
| Q |
218 |
tcctgatgaaataggaggtgaagaggttatttgtaatagtatttttgaaatttctgttgctgatttgggagggtgtctttgtatgattgtgaatcatcaa |
317 |
Q |
| |
|
|||||| |||||| |||||| || | | || | ||| ||||||||| |||||| | ||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
29453248 |
tcctga---aatagg---tgaagaagtgaatagtgagagt---tttgaaattggtgttgcggttttggaagggtgtctttgtatgattgtgaattatcaa |
29453338 |
T |
|
| Q |
318 |
actactaagattgatgtattggtgatgaaagaatatggttgtaaagatagttggtgtaaactttttactttggtggaatcgtgttttgttttacctttg |
416 |
Q |
| |
|
||| ||| |||||||| | |||||||||||||||||| |||| |||||| |||||| ||||||||||||||| |||||| ||||| ||||||||||| |
|
|
| T |
29453339 |
actgttaaaattgatgtttgggtgatgaaagaatatggatgtagagatagctggtgtgaactttttactttggcggaatcatgtttcattttacctttg |
29453437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 18 - 416
Target Start/End: Original strand, 29443062 - 29443454
Alignment:
| Q |
18 |
catgtcagactcttcacctcgaaaacaaactcgtggaaagtacttcctagtatagactatgttctttgctatgctctaa---ccatgggggtttttgttg |
114 |
Q |
| |
|
||||| |||||||||| || ||||||||||||||||||| |||||||| ||| || ||||| |||||||| || | ||||||| |||||||| |
|
|
| T |
29443062 |
catgttagactcttcagcttcaaaacaaactcgtggaaagaacttcctactatgccttacactctttcctatgctcgaagaacaatgggggattttgttg |
29443161 |
T |
|
| Q |
115 |
agaattctcttcattggataacggtgaagaaacctgatgggttacatccccgtttaattgtcgcgtttaacctaacacttgaggttttcaatgaggttcc |
214 |
Q |
| |
|
||||||| ||||| ||| ||| | ||||| |||| ||| || || ||| |||||||||||||||||||||||| ||| |||||||||||||||| |
|
|
| T |
29443162 |
agaattcccttcactgggtaatgactcggaaacttgatctgttgcaacctcgtgcaattgtcgcgtttaacctaacactcgagattttcaatgaggttcc |
29443261 |
T |
|
| Q |
215 |
atttcctgatgaaataggaggtgaagaggttatttgtaatagtatttttgaaatttctgttgctgatttgggagggtgtctttgtatgattgtgaatcat |
314 |
Q |
| |
|
|||||||| |||||| |||||| |||| | || | ||| ||| ||||| | || | | | ||| ||||||||||||||||||||||||| || |
|
|
| T |
29443262 |
ttttcctga---aatagg---tgaagatgttaatagtgagagt---tttcaaattggtatttcggttctggaagggtgtctttgtatgattgtgaattat |
29443352 |
T |
|
| Q |
315 |
caaactactaagattgatgtattggtgatgaaagaatatggttgtaaagatagttggtgtaaactttttactttggtggaatcgtgttttgttttacctt |
414 |
Q |
| |
|
|||||| |||| |||||||| | |||||||||||||||||| |||| |||||| |||||||||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
29443353 |
caaactgctaaaattgatgtttgggtgatgaaagaatatggatgtagagatagctggtgtaaactttttactttggctgaatcgtgtttcagtttacctt |
29443452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 75 - 391
Target Start/End: Original strand, 41966515 - 41966813
Alignment:
| Q |
75 |
tatgttctttgctatgctctaaccatgggggtttttgttgagaattctcttcattggataacggtgaagaaacctgatgggttacatccccgtttaattg |
174 |
Q |
| |
|
|||| ||||| |||||||| ||||||||||||||||||| | ||||||||||| ||||||| | ||| ||| |||||| ||||| || ||||||||| |
|
|
| T |
41966515 |
tatgctctttactatgctcaaaccatgggggtttttgttcacaattctcttcactggataatgaccaaggaacttgatggattacacccttgtttaattg |
41966614 |
T |
|
| Q |
175 |
tcgcgtttaacctaacacttgaggttttcaatgaggttccatttcctgatgaaataggaggtgaagaggttatttgtaatagtatttttgaaatttctgt |
274 |
Q |
| |
|
||||||||||||||||||||||| ||||||| ||||||| |||||| |||||| |||| || || | ||||||||||||||| |
|
|
| T |
41966615 |
tcgcgtttaacctaacacttgagattttcaaccaggttcctcttcctgctgaaat---aggtcaaaag---------------aattttgaaatttctgt |
41966696 |
T |
|
| Q |
275 |
tgctgatttgggagggtgtctttgtatgattgtgaatcatcaaactactaagattgatgtattggtgatgaaagaatatggttgtaaagatagttggtgt |
374 |
Q |
| |
|
| ||| |||||||||||||||||||||| ||||| || ||||||||| | ||||||| | |||||||||||||||| | | || |||||| |||||| |
|
|
| T |
41966697 |
ttctgttttgggagggtgtctttgtatggttgtggattatcaaactagcgatgttgatgtttgggtgatgaaagaatatcgatctagagatagctggtgt |
41966796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 167 - 403
Target Start/End: Complemental strand, 26575113 - 26574883
Alignment:
| Q |
167 |
tttaattgtcgcgtttaacctaacacttgaggttttcaatgaggttccatttcctgatgaaataggaggtgaagaggttatttgtaatagtatttttgaa |
266 |
Q |
| |
|
||||||| |||| |||||||| |||||||| |||||| |||||||| |||||||||||||||| | || | |||| | |||| ||| ||| || |
|
|
| T |
26575113 |
tttaattctcgcttttaacctttcacttgagactttcaacgaggttcctcttcctgatgaaatagggg---aacaagttaatagtaagagt---tttaaa |
26575020 |
T |
|
| Q |
267 |
atttctgttgctgatttgggagggtgtctttgtatgattgtgaatcatcaaactactaagattgatgtattggtgatgaaagaatatggttgtaaagata |
366 |
Q |
| |
|
||| |||||||||||| ||||||||||||||||||| |||| || || || |||||| |||||||| | |||||||||||||||||| |||| ||||| |
|
|
| T |
26575019 |
attcgtgttgctgatttaggagggtgtctttgtatgactgtggattataaagatactaaaattgatgtttgggtgatgaaagaatatggatgtagagata |
26574920 |
T |
|
| Q |
367 |
gttggtgtaaactttttactttggtggaatcgtgttt |
403 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||||| |
|
|
| T |
26574919 |
gttggtgtaaactttttactgtggttaaatcgtgttt |
26574883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 307 - 395
Target Start/End: Complemental strand, 561340 - 561252
Alignment:
| Q |
307 |
tgaatcatcaaactactaagattgatgtattggtgatgaaagaatatggttgtaaagatagttggtgtaaactttttactttggtggaa |
395 |
Q |
| |
|
||||| || ||||||||||| ||||||| | ||| |||||||||||||| | || ||||||||||||| | | |||||||||| |||| |
|
|
| T |
561340 |
tgaataataaaactactaaggttgatgtttgggtaatgaaagaatatggatttagagatagttggtgtgtattgtttactttggaggaa |
561252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 75; Significance: 2e-34; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 281 - 403
Target Start/End: Complemental strand, 45243843 - 45243721
Alignment:
| Q |
281 |
tttgggagggtgtctttgtatgattgtgaatcatcaaactactaagattgatgtattggtgatgaaagaatatggttgtaaagatagttggtgtaaactt |
380 |
Q |
| |
|
|||||||| |||||||||||||||||||||| ||||||||| | | |||||||| | |||||||||||||||||||| || ||||| ||||||||||||| |
|
|
| T |
45243843 |
tttgggagagtgtctttgtatgattgtgaattatcaaactaatgaaattgatgtttgggtgatgaaagaatatggttctagagatatttggtgtaaactt |
45243744 |
T |
|
| Q |
381 |
tttactttggtggaatcgtgttt |
403 |
Q |
| |
|
||||||||||| |||||||||| |
|
|
| T |
45243743 |
tttactttggttaaatcgtgttt |
45243721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 290 - 400
Target Start/End: Complemental strand, 45230570 - 45230457
Alignment:
| Q |
290 |
gtgtctttgtatgattgtgaatcatcaaactactaagattgatg---tattggtgatgaaagaatatggttgtaaagatagttggtgtaaactttttact |
386 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||| ||||||| | | |||||||||||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
45230570 |
gtgtctttgtatgattgtgaattatcaaactaataaaattgatgatgtttgggtgatgaaagaatatggttctagagatagttggtgtaaactttttact |
45230471 |
T |
|
| Q |
387 |
ttggtggaatcgtg |
400 |
Q |
| |
|
||||| ||||||| |
|
|
| T |
45230470 |
ttggttaaatcgtg |
45230457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 316 - 403
Target Start/End: Complemental strand, 45238059 - 45237972
Alignment:
| Q |
316 |
aaactactaagattgatgtattggtgatgaaagaatatggttgtaaagatagttggtgtaaactttttactttggtggaatcgtgttt |
403 |
Q |
| |
|
|||||||| | |||||||| | |||||||||||||||||| | || ||||||||||||||||||||||||||| || ||||||||||| |
|
|
| T |
45238059 |
aaactactcaaattgatgtttgggtgatgaaagaatatggatctagagatagttggtgtaaactttttactttagttgaatcgtgttt |
45237972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 71
Target Start/End: Complemental strand, 45238363 - 45238318
Alignment:
| Q |
26 |
actcttcacctcgaaaacaaactcgtggaaagtacttcctagtata |
71 |
Q |
| |
|
|||||||||||| |||| || |||||||||||||||||||||||| |
|
|
| T |
45238363 |
actcttcacctcaaaaatgaattcgtggaaagtacttcctagtata |
45238318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 272 - 403
Target Start/End: Complemental strand, 37462645 - 37462511
Alignment:
| Q |
272 |
tgttgctgatttgggagggtgtctttgtatgattgtgaatcatcaaa---ctactaagattgatgtattggtgatgaaagaatatggttgtaaagatagt |
368 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||| ||||||| || ||| ||||||| ||||||| | |||||||||||||||||| | || ||||||| |
|
|
| T |
37462645 |
tgttgctgttttgggaggctgtctttgtatgactgtgaattataaaaaaactactaaatttgatgtttgggtgatgaaagaatatggatctagagatagt |
37462546 |
T |
|
| Q |
369 |
tggtgtaaactttttactttggtggaatcgtgttt |
403 |
Q |
| |
|
||||||||||||| |||| ||| |||||||||| |
|
|
| T |
37462545 |
tggtgtaaactttgtactgtggataaatcgtgttt |
37462511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 317 - 388
Target Start/End: Complemental strand, 39427751 - 39427680
Alignment:
| Q |
317 |
aactactaagattgatgtattggtgatgaaagaatatggttgtaaagatagttggtgtaaactttttacttt |
388 |
Q |
| |
|
||||| |||| ||||||| | |||||||||||||||||| | || | |||||||||||||| | |||||||| |
|
|
| T |
39427751 |
aactaataagtttgatgtttgggtgatgaaagaatatggatatagatatagttggtgtaaattgtttacttt |
39427680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 37462893 - 37462843
Alignment:
| Q |
18 |
catgtcagactcttcacctcgaaaacaaactcgtggaaagtacttcctagt |
68 |
Q |
| |
|
||||| |||||||||| ||| |||||||||||||||||| || |||||||| |
|
|
| T |
37462893 |
catgtgagactcttcagctccaaaacaaactcgtggaaaatagttcctagt |
37462843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 328 - 389
Target Start/End: Complemental strand, 36224515 - 36224454
Alignment:
| Q |
328 |
ttgatgtattggtgatgaaagaatatggttgtaaagatagttggtgtaaactttttactttg |
389 |
Q |
| |
|
||||||| | |||||||||||||||||| | || |||||||||||||||| | ||||||||| |
|
|
| T |
36224515 |
ttgatgtttgggtgatgaaagaatatggatttagagatagttggtgtaaattgtttactttg |
36224454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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