View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11121_low_27 (Length: 422)

Name: NF11121_low_27
Description: NF11121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11121_low_27
NF11121_low_27
[»] chr3 (11 HSPs)
chr3 (15-405)||(27547211-27547601)
chr3 (15-163)||(27543797-27543939)
chr3 (261-394)||(27543659-27543793)
chr3 (15-164)||(7873890-7874039)
chr3 (89-167)||(13100768-13100846)
chr3 (31-165)||(19647296-19647431)
chr3 (78-166)||(7870125-7870213)
chr3 (261-395)||(27529805-27529944)
chr3 (158-205)||(10937412-10937459)
chr3 (172-206)||(27544627-27544661)
chr3 (169-206)||(20463121-20463158)
[»] chr5 (7 HSPs)
chr5 (15-179)||(25214440-25214604)
chr5 (15-179)||(25278590-25278754)
chr5 (54-206)||(12026273-12026424)
chr5 (62-179)||(7823115-7823233)
chr5 (135-205)||(35105137-35105207)
chr5 (133-206)||(17964368-17964442)
chr5 (169-206)||(17935645-17935682)
[»] chr8 (2 HSPs)
chr8 (15-166)||(28350602-28350753)
chr8 (15-77)||(29185660-29185722)
[»] chr6 (1 HSPs)
chr6 (18-167)||(5913995-5914144)
[»] chr7 (4 HSPs)
chr7 (15-179)||(26451385-26451549)
chr7 (78-166)||(48143640-48143728)
chr7 (45-193)||(23818699-23818847)
chr7 (128-193)||(7578636-7578701)
[»] chr2 (3 HSPs)
chr2 (57-154)||(17830746-17830843)
chr2 (208-237)||(11312280-11312309)
chr2 (15-52)||(17319634-17319671)
[»] chr4 (2 HSPs)
chr4 (15-166)||(42342762-42342913)
chr4 (169-205)||(20679250-20679286)
[»] scaffold0505 (1 HSPs)
scaffold0505 (15-62)||(9223-9270)
[»] chr1 (2 HSPs)
chr1 (15-116)||(16168766-16168866)
chr1 (169-206)||(18188161-18188198)


Alignment Details
Target: chr3 (Bit Score: 359; Significance: 0; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 15 - 405
Target Start/End: Original strand, 27547211 - 27547601
Alignment:
Q  15 atgaataataaagttggtggatgtccattattgatctttcaaattcttataattcccattagtgaatgaattgttagtgctctttgattgcatgtgatca 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27547211 atgaataataaagttggtggatgtccattattgatctttcaaattcttataattcccattagtgaatgaattgttagtgctctttgattgcatgtgatca 27547310  T
Q  115 tttacctactgatttgtatcctataaataggactcatgttttgatgtaaagatgcacttgagaagtaatacaacatactcttttgttatctcattttctc 214  Q
    ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  27547311 tttacctgctgattggtatcctataaataggactcatgttttgatgtaaagatgcacttgagaagtaatacaacatactcttttgttatctcgttttctc 27547410  T
Q  215 tactcttctatattgtacaatatgttacgatattaatcataacttctatgtatgtaatttttgtctatttctaatgtttcaaatttaacttcaaaatgat 314  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||    
T  27547411 tactcttctatgttgtacaatatgttacgatattaatcataacttctatgtatgtaatttttgtctatttccaatgattcaaatttaacttcaaaatgat 27547510  T
Q  315 ctctacgtttcgactcattaatcatcgtttttgatttctaaatgtttcatcatttattaacataagtaaaacacgaaactaacacctaatt 405  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  27547511 ctccacgtttcgactcattaatcatcgtttttgatttctaaatgtttcatcatttattaacataagtaaaacccgaaactaacacctaatt 27547601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 15 - 163
Target Start/End: Original strand, 27543797 - 27543939
Alignment:
Q  15 atgaataataaagttggtggatgtccattattgatctttcaaattcttataattcccattagtgaatgaattgttagtgctctttgattgcatgtgatca 114  Q
    ||||||||||||||||||||||||||||| || ||||| ||||||||||||| |      ||||||||||||||||||||  ||||||||||||||||||    
T  27543797 atgaataataaagttggtggatgtccattttttatcttccaaattcttataact------agtgaatgaattgttagtgcattttgattgcatgtgatca 27543890  T
Q  115 tttacctactgatttgtatcctataaataggactcatgttttgatgtaa 163  Q
    | ||| | || |||||||||||||||||||||||| |||||||||||||    
T  27543891 tatacatgcttatttgtatcctataaataggactcgtgttttgatgtaa 27543939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 261 - 394
Target Start/End: Original strand, 27543659 - 27543793
Alignment:
Q  261 tatgtatgtaatttttgtcta-tttctaatgtttcaaatttaacttcaaaatgatctctacgtttcgactcattaa-tcatcgtttttgatttctaaatg 358  Q
    ||||||||||||||| ||||| |||| |||| ||||| ||||||||||||||||||||||  |||| |||||| |  |||||||||||| ||||||||||    
T  27543659 tatgtatgtaatttt-gtctactttccaatgattcaagtttaacttcaaaatgatctctatttttcaactcataatctcatcgtttttgctttctaaatg 27543757  T
Q  359 tttcatcatttattaacataagtaaaacacgaaact 394  Q
    |||||||||||||||||||||||||||| |||||||    
T  27543758 tttcatcatttattaacataagtaaaacccgaaact 27543793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 15 - 164
Target Start/End: Complemental strand, 7874039 - 7873890
Alignment:
Q  15 atgaataataaagttggtggatgtccattattgatctttcaaattcttataattcccattagtg-aatgaattgttagtgctctttgattgcatgtgatc 113  Q
    |||||||||||  |||||||||||  ||| ||||||||  ||||||| |||| ||| | ||||| |||||||||||||||||||||||||| |||||| |    
T  7874039 atgaataataatattggtggatgttaatttttgatcttctaaattct-ataactcctaatagtggaatgaattgttagtgctctttgattgtatgtgaac 7873941  T
Q  114 atttacctactgatttgtatcctataaataggactcatgttttgatgtaaa 164  Q
    ||| || | || ||||||||| |||||||| |||||||||||| |||||||    
T  7873940 attcacttgcttatttgtatcttataaataagactcatgttttaatgtaaa 7873890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 89 - 167
Target Start/End: Original strand, 13100768 - 13100846
Alignment:
Q  89 tagtgctctttgattgcatgtgatcatttacctactgatttgtatcctataaataggactcatgttttgatgtaaagat 167  Q
    ||||| |||||||||| | ||||||||| || | || ||||||||||||||||||||||||||||||||||||||||||    
T  13100768 tagtggtctttgattgtacgtgatcattcacttgcttatttgtatcctataaataggactcatgttttgatgtaaagat 13100846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 31 - 165
Target Start/End: Original strand, 19647296 - 19647431
Alignment:
Q  31 gtggatgtccatta--ttgatctttcaaattcttataattcccattagtgaatgaattgttagtgctctttgattgcatgtgatcatttacctactgatt 128  Q
    |||||||||||| |  |||||||| ||  ||||||||| |||||||| |||||| |||||||||| | ||| ||| ||| |||||||| || |||| |||    
T  19647296 gtggatgtccataaccttgatcttccacgttcttataactcccattactgaatggattgttagtgatgtttaatttcatttgatcattcacttact-att 19647394  T
Q  129 tgtatcctataaataggactcatgttttgatgtaaag 165  Q
    |||||||||||||||| ||||| ||| | ||||||||    
T  19647395 tgtatcctataaatagaactcaagttgtaatgtaaag 19647431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 78 - 166
Target Start/End: Complemental strand, 7870213 - 7870125
Alignment:
Q  78 gaatgaattgttagtgctctttgattgcatgtgatcatttacctactgatttgtatcctataaataggactcatgttttgatgtaaaga 166  Q
    |||||||||||||| ||| |||||||||||||||  |||||| |  | |||||||| |||||||||| | |||||||||||||||||||    
T  7870213 gaatgaattgttagcgctttttgattgcatgtgaatatttacttgtttatttgtattctataaatagaaatcatgttttgatgtaaaga 7870125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 261 - 395
Target Start/End: Original strand, 27529805 - 27529944
Alignment:
Q  261 tatgtatgtaatttttgtcta-tttctaatgtttcaaatttaacttcaaaatgatctctacg---tttcgactcattaatc--atcgtttttgatttcta 354  Q
    ||||||||||||||| ||||| |||| |||| || || |||||||||||||||||||||||    |||| |||||| ||||  ||| |  ||| |||||     
T  27529805 tatgtatgtaatttt-gtctactttccaatgatttaagtttaacttcaaaatgatctctactacttttcaactcatgaatctcatcataattgctttctc 27529903  T
Q  355 aatgtttcatcatttattaacataagtaaaacacgaaacta 395  Q
    |||||||||||||||||||||||||||||||  ||||||||    
T  27529904 aatgtttcatcatttattaacataagtaaaatccgaaacta 27529944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 158 - 205
Target Start/End: Original strand, 10937412 - 10937459
Alignment:
Q  158 atgtaaagatgcacttgagaagtaatacaacatactcttttgttatct 205  Q
    |||||||||  || |||||||| |||||||||||||||||||||||||    
T  10937412 atgtaaagacacatttgagaagcaatacaacatactcttttgttatct 10937459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 172 - 206
Target Start/End: Original strand, 27544627 - 27544661
Alignment:
Q  172 ttgagaagtaatacaacatactcttttgttatctc 206  Q
    ||||||||||||| |||||||||||||||||||||    
T  27544627 ttgagaagtaatataacatactcttttgttatctc 27544661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 206
Target Start/End: Complemental strand, 20463158 - 20463121
Alignment:
Q  169 cacttgagaagtaatacaacatactcttttgttatctc 206  Q
    ||||||||||| |||||| |||||||||||||||||||    
T  20463158 cacttgagaagcaatacatcatactcttttgttatctc 20463121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 102; Significance: 2e-50; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 15 - 179
Target Start/End: Complemental strand, 25214604 - 25214440
Alignment:
Q  15 atgaataataaagttggtggatgtccattattgatctttcaaattcttataattcccattagtg-aatgaattgttagtgctctttgattgcatgtgatc 113  Q
    ||||||||||||||| ||||||||||||| |||||||| ||| |||| |||| ||||||||||| ||||||||||||||||||||||||||||||||| |    
T  25214604 atgaataataaagttagtggatgtccattcttgatcttccaagttct-ataactcccattagtggaatgaattgttagtgctctttgattgcatgtgaac 25214506  T
Q  114 atttacctactgatttgtatcctataaataggactcatgttttgatgtaaagatgcacttgagaag 179  Q
    ||| || | || |||||||||||||||||||||||||||||||||||||||||| |||||| ||||    
T  25214505 attcacttgcttatttgtatcctataaataggactcatgttttgatgtaaagatacacttgggaag 25214440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 15 - 179
Target Start/End: Complemental strand, 25278754 - 25278590
Alignment:
Q  15 atgaataataaagttggtggatgtccattattgatctttcaaattcttataattcccattagtg-aatgaattgttagtgctctttgattgcatgtgatc 113  Q
    ||||||||||||||| ||||||||||||| |||||||| ||| |||| |||| ||||||||||| ||||||||||||||||||||||||||||||||| |    
T  25278754 atgaataataaagttagtggatgtccattcttgatcttccaagttct-ataactcccattagtggaatgaattgttagtgctctttgattgcatgtgaac 25278656  T
Q  114 atttacctactgatttgtatcctataaataggactcatgttttgatgtaaagatgcacttgagaag 179  Q
    ||| || | || |||||||||||||||||||||||||||||||||||||||||| |||||| ||||    
T  25278655 attcacttgcttatttgtatcctataaataggactcatgttttgatgtaaagatacacttgggaag 25278590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 54 - 206
Target Start/End: Complemental strand, 12026424 - 12026273
Alignment:
Q  54 caaattcttataattcccattagtgaatgaattgttagtgctctttgattgcatgtgatcatttacctactgatttgtatcctataaataggactcatgt 153  Q
    ||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||| || | || ||||||||||| |||||| |||||||||    
T  12026424 caaattcttataactctcattagtgaatgaattgttagtgctctttgattgcatg-gatcattcacttgcttatttgtatcctctaaataagactcatgt 12026326  T
Q  154 tttgatgtaaagatgcacttgagaagtaatacaacatactcttttgttatctc 206  Q
    ||||||||||||||  |||||||||||||||| ||||||||||||||| ||||    
T  12026325 tttgatgtaaagatatacttgagaagtaatacgacatactcttttgttctctc 12026273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 62 - 179
Target Start/End: Complemental strand, 7823233 - 7823115
Alignment:
Q  62 tataattcccattagtg-aatgaattgttagtgctctttgattgcatgtgatcatttacctactgatttgtatcctataaataggactcatgttttgatg 160  Q
    ||||| ||||| ||||| ||| ||||||||||||||||||||||||||||| |||| || | || |||||| |||||||||||||||| |||||||||||    
T  7823233 tataactcccactagtggaataaattgttagtgctctttgattgcatgtgaacattcacttgcttatttgtgtcctataaataggacttatgttttgatg 7823134  T
Q  161 taaagatgcacttgagaag 179  Q
    ||||||  |||||| ||||    
T  7823133 taaagaaacacttgtgaag 7823115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 135 - 205
Target Start/End: Original strand, 35105137 - 35105207
Alignment:
Q  135 ctataaataggactcatgttttgatgtaaagatgcacttgagaagtaatacaacatactcttttgttatct 205  Q
    ||||||||||||||||| ||||  ||||||||   ||||||||||||||||||||||||||||||||||||    
T  35105137 ctataaataggactcatattttagtgtaaagacatacttgagaagtaatacaacatactcttttgttatct 35105207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 133 - 206
Target Start/End: Original strand, 17964368 - 17964442
Alignment:
Q  133 tcctataaataggactcatgttttgatgtaaag-atgcacttgagaagtaatacaacatactcttttgttatctc 206  Q
    ||||||||||| |||| || | | ||||||||| |  ||||||||||| ||||||||||||||||||||||||||    
T  17964368 tcctataaatatgacttatatctcgatgtaaaggacacacttgagaagcaatacaacatactcttttgttatctc 17964442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 169 - 206
Target Start/End: Original strand, 17935645 - 17935682
Alignment:
Q  169 cacttgagaagtaatacaacatactcttttgttatctc 206  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  17935645 cacttgagaagcaatacaacatactcttttgttatctc 17935682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 93; Significance: 4e-45; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 15 - 166
Target Start/End: Complemental strand, 28350753 - 28350602
Alignment:
Q  15 atgaataataaagttggtggatgtccattattgatctttcaaattcttataattcccattagtg-aatgaattgttagtgctctttgattgcatgtgatc 113  Q
    ||||||||||||||| ||| ||||||||| |||||||| ||| |||| |||| ||||||||||| ||||||||||||||||||||||||||||||||| |    
T  28350753 atgaataataaagttagtgaatgtccattcttgatcttccaagttct-ataactcccattagtggaatgaattgttagtgctctttgattgcatgtgaac 28350655  T
Q  114 atttacctactgatttgtatcctataaataggactcatgttttgatgtaaaga 166  Q
    ||| || | || |||||||||||||||||||||||||||||||||||||||||    
T  28350654 attcacttgcttatttgtatcctataaataggactcatgttttgatgtaaaga 28350602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 15 - 77
Target Start/End: Complemental strand, 29185722 - 29185660
Alignment:
Q  15 atgaataataaagttggtggatgtccattattgatctttcaaattcttataattcccattagt 77  Q
    ||||||||||||||||||||||||||||| |||||||| ||  ||| |||||| |||||||||    
T  29185722 atgaataataaagttggtggatgtccattcttgatcttccaccttcctataatccccattagt 29185660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 18 - 167
Target Start/End: Original strand, 5913995 - 5914144
Alignment:
Q  18 aataataaagttggtggatgtccattattgatctttcaaattcttataattcccattagtg-aatgaattgttagtgctctttgattgcatgtgatcatt 116  Q
    ||||||||||||| ||||||| ||||||||||||| ||| |||| |||| ||||||||||| |||||||||||||||||| ||||||  || ||| ||||    
T  5913995 aataataaagttgttggatgttcattattgatcttccaagttct-ataactcccattagtggaatgaattgttagtgctcattgattctatatgaacatt 5914093  T
Q  117 tacctactgatttgtatcctataaataggactcatgttttgatgtaaagat 167  Q
     || |  | ||||||||| |||||||| |||||||||||||||||||||||    
T  5914094 cacttgtttatttgtatcatataaatatgactcatgttttgatgtaaagat 5914144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 15 - 179
Target Start/End: Original strand, 26451385 - 26451549
Alignment:
Q  15 atgaataataaagttggtggatgtccattattgatctttcaaattcttataattcccattagt-gaatgaattgttagtgctctttgattgcatgtgatc 113  Q
    ||||||||||||||||||| ||||||||| |||||||||||| ||| ||||| ||||||| || ||||||||||||||| |||||| ||||||| ||| |    
T  26451385 atgaataataaagttggtgaatgtccatttttgatctttcaagttc-tataactcccatttgtggaatgaattgttagtactcttttattgcatatgaac 26451483  T
Q  114 atttacctactgatttgtatcctataaataggactcatgttttgatgtaaagatgcacttgagaag 179  Q
    ||| |  |    |||||||||||||||||||||||||||   |||| ||||||| |||||| ||||    
T  26451484 attcatttgtgtatttgtatcctataaataggactcatgcgatgatataaagatacacttgtgaag 26451549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 78 - 166
Target Start/End: Original strand, 48143640 - 48143728
Alignment:
Q  78 gaatgaattgttagtgctctttgattgcatgtgatcatttacctactgatttgtatcctataaataggactcatgttttgatgtaaaga 166  Q
    ||||||||||||||||||  |||| |||| |||| |||| || | || ||||||||||||||||||||||||||||||||| |||||||    
T  48143640 gaatgaattgttagtgcttattgaatgcacgtgaacattcacttgcttatttgtatcctataaataggactcatgttttgaggtaaaga 48143728  T

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Target: chr7; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 45 - 193
Target Start/End: Complemental strand, 23818847 - 23818699
Alignment:
Q  45 ttgatctttcaaattcttataattcccattagtgaatgaattgttagtgctctttgattgcatgtgatcatttacctactgatttgtatcctataaatag 144  Q
    |||||||| || |||||||||| |||||||||||| || ||| |||||| | ||| |||  || |||||||| || |||| |||||||||||||||||||    
T  23818847 ttgatcttccatattcttataactcccattagtgagtggattcttagtgatgtttaattaaatttgatcattcacttact-atttgtatcctataaatag 23818749  T
Q  145 gactcatgttttgatgtaaag-atgcacttgagaagtaatacaacatact 193  Q
    |||||| ||| | |||||||| |  |||||| ||||||| |||| |||||    
T  23818748 gactcaagttgtaatgtaaagtacacacttgtgaagtaaaacaatatact 23818699  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 128 - 193
Target Start/End: Original strand, 7578636 - 7578701
Alignment:
Q  128 ttgtatcctataaataggactcatgttttgatgtaaagatgcacttgagaagtaatacaacatact 193  Q
    |||||||||||||||||||||||| || |  | ||||||  ||||||||||| |||||||||||||    
T  7578636 ttgtatcctataaataggactcatattatagtataaagacacacttgagaagcaatacaacatact 7578701  T

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Target: chr2 (Bit Score: 58; Significance: 3e-24; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 57 - 154
Target Start/End: Complemental strand, 17830843 - 17830746
Alignment:
Q  57 attcttataattcccattagtgaatgaattgttagtgctctttgattgcatgtgatcatttacctactgatttgtatcctataaataggactcatgtt 154  Q
    |||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||| || || | || ||||||||| |||||||||||| ||||||    
T  17830843 attcttataactccaattagtgaatgaattgttagtgctctttgattacatgtgatctttcacttgcttatttgtatcatataaataggacccatgtt 17830746  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 237
Target Start/End: Original strand, 11312280 - 11312309
Alignment:
Q  208 ttttctctactcttctatattgtacaatat 237  Q
    ||||||||||||||||||||||||||||||    
T  11312280 ttttctctactcttctatattgtacaatat 11312309  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 17319671 - 17319634
Alignment:
Q  15 atgaataataaagttggtggatgtccattattgatctt 52  Q
    ||||||||||| ||||||||||||||||| ||||||||    
T  17319671 atgaataataatgttggtggatgtccattcttgatctt 17319634  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 15 - 166
Target Start/End: Original strand, 42342762 - 42342913
Alignment:
Q  15 atgaataataaagttggtggatgtccattattgatctttcaaattcttataattcccattagtgaatgaattgttagtgctctttgattgcatgtgatca 114  Q
    |||||| |||||||||||||||||| |   ||||| ||||| |||||||||| |   |||||||||| ||||||||||  ||||| | |  || | ||||    
T  42342762 atgaatgataaagttggtggatgtctacctttgatttttcacattcttataactttaattagtgaataaattgttagttgtctttaagtatattttatca 42342861  T
Q  115 tttacctactgatttgtatcctataaataggactcatgttttgatgtaaaga 166  Q
    ||||| |||| |||||||||  ||||||| || ||||| ||| |||||||||    
T  42342862 tttacttacttatttgtatcacataaatacgagtcatgatttaatgtaaaga 42342913  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 169 - 205
Target Start/End: Complemental strand, 20679286 - 20679250
Alignment:
Q  169 cacttgagaagtaatacaacatactcttttgttatct 205  Q
    |||||||||||||||| || |||||||||||||||||    
T  20679286 cacttgagaagtaatataatatactcttttgttatct 20679250  T

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Target: scaffold0505 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0505
Description:

Target: scaffold0505; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 15 - 62
Target Start/End: Original strand, 9223 - 9270
Alignment:
Q  15 atgaataataaagttggtggatgtccattattgatctttcaaattctt 62  Q
    ||||||||||| ||||||||||||||||| |||||||| |||||||||    
T  9223 atgaataataatgttggtggatgtccattcttgatcttccaaattctt 9270  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 15 - 116
Target Start/End: Original strand, 16168766 - 16168866
Alignment:
Q  15 atgaataataaagttggtggatgtccattattgatctttcaaattcttataattcccattagtgaatgaattgttagtgctctttgattgcatgtgatca 114  Q
    ||||||||||| ||||||| ||||| ||| ||||| || ||||||||||||| ||   ||||||||  ||||||||||| |||||||  | |||||||||    
T  16168766 atgaataataatgttggtgaatgtctattcttgattttccaaattcttataactctagttagtgaa-aaattgttagtggtctttgaccgaatgtgatca 16168864  T
Q  115 tt 116  Q
    ||    
T  16168865 tt 16168866  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 169 - 206
Target Start/End: Complemental strand, 18188198 - 18188161
Alignment:
Q  169 cacttgagaagtaatacaacatactcttttgttatctc 206  Q
    |||||||||||||||| |||||||||||||||||||||    
T  18188198 cacttgagaagtaatataacatactcttttgttatctc 18188161  T

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