View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11121_low_29 (Length: 397)
Name: NF11121_low_29
Description: NF11121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11121_low_29 |
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Alignment Details
Target: chr7 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 19 - 392
Target Start/End: Complemental strand, 36318522 - 36318149
Alignment:
| Q |
19 |
atgtgatgtctcagatcgagccatcaaattaatagatagggaactggttaaggaataaaaattagaaattgtttaatggaaagcaacatgttacataagg |
118 |
Q |
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| T |
36318522 |
atgtgatgtctcagatcgagccatcaaattaatagatagggaactggttaaggaataaaaattagaaattgtttaatggaaagcaacatgttacataagg |
36318423 |
T |
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| Q |
119 |
cactggttagcatttgccgtcaaatttaaaggcgtgatcttggattctcttttagaggattcttggaaataaatcatcttttaaacccttagtttttaca |
218 |
Q |
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| T |
36318422 |
cactggttagcatttgccgtcaaatttaaaggcgtgatcttggattctcttttagaggattcttggaaataaatcatcttttaaacccttagtttttaca |
36318323 |
T |
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| Q |
219 |
ttctggaatcaggttgaccccttccttcatttagttgaagacaagttgcaggcggtcagctttgcacttgacaatctggccatcaactatggatccaaag |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36318322 |
ttctggaatcaggttgaccccttccttcatttagttgaagacaagttgcaggcggtcagctttgcacttgacaatctggccatcaactatggatccaaag |
36318223 |
T |
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| Q |
319 |
aagatgatgagagggccttacaaacactttcagaattattgacttcggcacaccaaacacaggaatcctttgct |
392 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36318222 |
aagatgatgagagggccttacaaacactttcagaattattgacttcggcacaccaaacacaggaatcctttgct |
36318149 |
T |
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