View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11121_low_31 (Length: 368)
Name: NF11121_low_31
Description: NF11121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11121_low_31 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 39 - 353
Target Start/End: Complemental strand, 5763056 - 5762740
Alignment:
| Q |
39 |
atgatttgacgattataattgattgacagccaaacaaattacactacgaatttattaacttattcatatattcaatttatgaaaatcaaatgcataataa |
138 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
5763056 |
atgatttgacgattataattgattgacagccaaacaaattacactacgaatttattaatttattcatatattcaatttatgaaaattaaatgcataataa |
5762957 |
T |
|
| Q |
139 |
gtattcaacttagtaattaagcaaaaacatcccgctg---------atcatgttagcgctaactgagnnnnnnnntgcataataagtaaaagactataaa |
229 |
Q |
| |
|
|||||||||||| |||||| |||||||||| ||||||| ||||||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
5762956 |
gtattcaactta-------agcaaaggcatcccgctgcattatgtgatcatgtgagcgctaaccgagaaaaaaaatgcataataagtaaaagactataaa |
5762864 |
T |
|
| Q |
230 |
atctataacattataacttttccaaacatattcaatctagaagagtttgttttgggaagtccatcctaaaaatgcagaattttattttttgggaacaaaa |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
5762863 |
atctataacattataacttttccaaacatattcaatctagaagagtttgttttgggaagtccatcctaaaaatgtagaattttattttttgggaacaaaa |
5762764 |
T |
|
| Q |
330 |
caaatgtagattgtttttatcttc |
353 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
5762763 |
caaatgtagattgtttttatcttc |
5762740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University