View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11121_low_32 (Length: 366)

Name: NF11121_low_32
Description: NF11121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11121_low_32
NF11121_low_32
[»] chr7 (7 HSPs)
chr7 (19-354)||(25833189-25833526)
chr7 (98-354)||(25847432-25847681)
chr7 (81-126)||(46281057-46281102)
chr7 (19-136)||(25827483-25827600)
chr7 (85-123)||(29363621-29363659)
chr7 (74-123)||(43854949-43854998)
chr7 (81-123)||(11619073-11619115)
[»] chr8 (2 HSPs)
chr8 (81-126)||(10488573-10488618)
chr8 (85-126)||(10062060-10062101)
[»] chr1 (3 HSPs)
chr1 (205-258)||(22636724-22636777)
chr1 (85-126)||(33723301-33723342)
chr1 (87-123)||(1662686-1662722)
[»] chr5 (6 HSPs)
chr5 (91-126)||(11615579-11615614)
chr5 (92-126)||(5563811-5563845)
chr5 (91-125)||(27105876-27105910)
chr5 (85-126)||(8089371-8089412)
chr5 (85-121)||(14257563-14257599)
chr5 (85-117)||(38047798-38047830)
[»] chr2 (7 HSPs)
chr2 (84-123)||(43259948-43259987)
chr2 (85-123)||(30990358-30990396)
chr2 (85-123)||(31096415-31096453)
chr2 (84-126)||(40837355-40837397)
chr2 (85-126)||(15120293-15120334)
chr2 (85-126)||(41170720-41170761)
chr2 (85-117)||(2790357-2790389)
[»] chr6 (1 HSPs)
chr6 (85-123)||(33068521-33068559)
[»] scaffold0020 (1 HSPs)
scaffold0020 (85-126)||(159892-159933)
[»] chr4 (1 HSPs)
chr4 (85-126)||(54277242-54277283)


Alignment Details
Target: chr7 (Bit Score: 303; Significance: 1e-170; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 19 - 354
Target Start/End: Complemental strand, 25833526 - 25833189
Alignment:
Q  19 tgtttgtagcttttgaaatttgaaactgtttgtttgttatgtgctattgatttcacattttcggtttgtttagattggcttatttgaacttatctactaa 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||    
T  25833526 tgtttgtagcttttgaaatttgaaactgtttgtttgttatgtgctattgatttcacatatttggtttgtttagattgacttatttgaacttatctactaa 25833427  T
Q  119 cataaacaacatttgtgaaaaggtgtaatatgtctagattgcatgtcatggtgatactccaaatttatgagataagaaaaaattataaataaaactcttt 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25833426 cataaacaacatttgtgaaaaggtgtaatatgtctagattgcatgtcatggtgatactccaaatttatgagataagaaaaaattataaataaaactcttt 25833327  T
Q  219 attactttattttatttcatggccatcatcttagagtacattattatcataattataaggtccatgaaattcgaaaaaagaaatacaattattgggtaca 318  Q
    |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25833326 attactttattttatttcatggccatcatcttagagcacatgattatcataattataaggtccatgaaattcgaaaaaagaaatacaattattgggtaca 25833227  T
Q  319 tataattattgtacaattc--ttttgctaacgcaattc 354  Q
    ||||||||||||| |||||  |||||||||||||||||    
T  25833226 tataattattgtataattcttttttgctaacgcaattc 25833189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 98 - 354
Target Start/End: Complemental strand, 25847681 - 25847432
Alignment:
Q  98 ttatttgaacttatctactaacataaacaacatttgtgaaaaggtgtaatatgtctagattgcatg----tcatggtgatactccaaatttatgagataa 193  Q
    ||||||||  ||||||||| ||||||||||||||||||||||||||  ||||||||||||||||||    ||||||||||||||||||||||||||||||    
T  25847681 ttatttgagtttatctactgacataaacaacatttgtgaaaaggtgcgatatgtctagattgcatgcatgtcatggtgatactccaaatttatgagataa 25847582  T
Q  194 gaaaaaattataaataaaactctttattactttattttatttcatggccatcatcttagagtacattattatcataattataaggtccatgaaattcgaa 293  Q
    ||||||||||||||||||||||||||         | ||| ||||||||||||| |||||||||   ||| |||||||||||||||||||||||||||||    
T  25847581 gaaaaaattataaataaaactcttta---------tgtatgtcatggccatcattttagagtac---attgtcataattataaggtccatgaaattcgaa 25847494  T
Q  294 -aaaagaaatacaattattgggtacatataattattgtacaattcttttgctaacgcaattc 354  Q
     |||| ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||    
T  25847493 gaaaaaaaatacaattattgggtacatataattattgtacaattcttttgcgaacacaattc 25847432  T

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Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 81 - 126
Target Start/End: Original strand, 46281057 - 46281102
Alignment:
Q  81 ggtttgtttagattggcttatttgaacttatctactaacataaaca 126  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||    
T  46281057 ggtttgtttggattggcttatttgaacttatctactaacataaaca 46281102  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 136
Target Start/End: Complemental strand, 25827600 - 25827483
Alignment:
Q  19 tgtttgtagcttttgaaatttgaaactgtttgtttgttatgtgctattgatttcacattttcggtttgtttagattggcttatttgaacttatctactaa 118  Q
    |||||| ||||||| ||  ||| ||||||||||||||| |||| ||||||||| |||| || ||  ||||| ||||||||||||||| || ||||||       
T  25827600 tgtttgcagctttttaatgttgcaactgtttgtttgttttgtgatattgatttaacatattgggcatgtttcgattggcttatttgagctaatctaccgg 25827501  T
Q  119 cataaacaacatttgtga 136  Q
    ||||| || |||||||||    
T  25827500 cataagcagcatttgtga 25827483  T

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Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 85 - 123
Target Start/End: Complemental strand, 29363659 - 29363621
Alignment:
Q  85 tgtttagattggcttatttgaacttatctactaacataa 123  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  29363659 tgtttggattggcttatttgaacttatctactaacataa 29363621  T

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Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 74 - 123
Target Start/End: Original strand, 43854949 - 43854998
Alignment:
Q  74 cattttcggtttgtttagattggcttatttgaacttatctactaacataa 123  Q
    |||||| ||| |||||  ||||||||||||||||||||||||||||||||    
T  43854949 cattttaggtctgtttgaattggcttatttgaacttatctactaacataa 43854998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 81 - 123
Target Start/End: Original strand, 11619073 - 11619115
Alignment:
Q  81 ggtttgtttagattggcttatttgaacttatctactaacataa 123  Q
    ||||||||| ||||||||||||||| |||||||||| ||||||    
T  11619073 ggtttgtttggattggcttatttgagcttatctactgacataa 11619115  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 81 - 126
Target Start/End: Complemental strand, 10488618 - 10488573
Alignment:
Q  81 ggtttgtttagattggcttatttgaacttatctactaacataaaca 126  Q
    ||||||||| ||||||||||||||| |||||| |||||||||||||    
T  10488618 ggtttgtttggattggcttatttgagcttatcaactaacataaaca 10488573  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 126
Target Start/End: Original strand, 10062060 - 10062101
Alignment:
Q  85 tgtttagattggcttatttgaacttatctactaacataaaca 126  Q
    ||||| ||||||||||||||| ||||||||||||||| ||||    
T  10062060 tgtttggattggcttatttgagcttatctactaacatcaaca 10062101  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 205 - 258
Target Start/End: Original strand, 22636724 - 22636777
Alignment:
Q  205 aaataaaactctttattactttattttatttcatggccatcatcttagagtaca 258  Q
    ||||||||| ||||||| | |||||||||||||| |||||||| ||||||||||    
T  22636724 aaataaaacactttatttccttattttatttcattgccatcatattagagtaca 22636777  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 126
Target Start/End: Original strand, 33723301 - 33723342
Alignment:
Q  85 tgtttagattggcttatttgaacttatctactaacataaaca 126  Q
    ||||| ||||| ||||||||||||||||||||| ||||||||    
T  33723301 tgtttggattgacttatttgaacttatctactaccataaaca 33723342  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 123
Target Start/End: Complemental strand, 1662722 - 1662686
Alignment:
Q  87 tttagattggcttatttgaacttatctactaacataa 123  Q
    ||||||||||||||||||| ||||||||||| |||||    
T  1662722 tttagattggcttatttgagcttatctactagcataa 1662686  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 91 - 126
Target Start/End: Original strand, 11615579 - 11615614
Alignment:
Q  91 gattggcttatttgaacttatctactaacataaaca 126  Q
    ||||||||||||||| ||||||||||||||||||||    
T  11615579 gattggcttatttgagcttatctactaacataaaca 11615614  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 126
Target Start/End: Complemental strand, 5563845 - 5563811
Alignment:
Q  92 attggcttatttgaacttatctactaacataaaca 126  Q
    |||||||||||||||||||||||| ||||||||||    
T  5563845 attggcttatttgaacttatctacaaacataaaca 5563811  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 125
Target Start/End: Original strand, 27105876 - 27105910
Alignment:
Q  91 gattggcttatttgaacttatctactaacataaac 125  Q
    |||||||||||||||||||||||| ||||||||||    
T  27105876 gattggcttatttgaacttatctattaacataaac 27105910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 126
Target Start/End: Complemental strand, 8089412 - 8089371
Alignment:
Q  85 tgtttagattggcttatttgaacttatctactaacataaaca 126  Q
    ||||| ||||||||||||||||||||||| || |||||||||    
T  8089412 tgtttggattggcttatttgaacttatctcctgacataaaca 8089371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 121
Target Start/End: Complemental strand, 14257599 - 14257563
Alignment:
Q  85 tgtttagattggcttatttgaacttatctactaacat 121  Q
    ||||| ||||| |||||||||||||||||||||||||    
T  14257599 tgtttggattgacttatttgaacttatctactaacat 14257563  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 117
Target Start/End: Original strand, 38047798 - 38047830
Alignment:
Q  85 tgtttagattggcttatttgaacttatctacta 117  Q
    |||||||||||||||| ||||||||||||||||    
T  38047798 tgtttagattggcttacttgaacttatctacta 38047830  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 84 - 123
Target Start/End: Complemental strand, 43259987 - 43259948
Alignment:
Q  84 ttgtttagattggcttatttgaacttatctactaacataa 123  Q
    |||||| ||||||||||||||||||||||||||| |||||    
T  43259987 ttgtttggattggcttatttgaacttatctactagcataa 43259948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 123
Target Start/End: Original strand, 30990358 - 30990396
Alignment:
Q  85 tgtttagattggcttatttgaacttatctactaacataa 123  Q
    ||||| ||||||||||||||| |||||||||||||||||    
T  30990358 tgtttggattggcttatttgagcttatctactaacataa 30990396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 123
Target Start/End: Complemental strand, 31096453 - 31096415
Alignment:
Q  85 tgtttagattggcttatttgaacttatctactaacataa 123  Q
    |||||| ||||||||||||||||||||||||| ||||||    
T  31096453 tgtttaaattggcttatttgaacttatctactgacataa 31096415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 126
Target Start/End: Original strand, 40837355 - 40837397
Alignment:
Q  84 ttgtttagattggcttatttgaacttatctactaacataaaca 126  Q
    |||||| ||||||||||||||| |||||||||| |||||||||    
T  40837355 ttgtttggattggcttatttgagcttatctactgacataaaca 40837397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 126
Target Start/End: Complemental strand, 15120334 - 15120293
Alignment:
Q  85 tgtttagattggcttatttgaacttatctactaacataaaca 126  Q
    ||||| ||||| ||||||||||||||||||||| ||||||||    
T  15120334 tgtttggattgacttatttgaacttatctactagcataaaca 15120293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 126
Target Start/End: Complemental strand, 41170761 - 41170720
Alignment:
Q  85 tgtttagattggcttatttgaacttatctactaacataaaca 126  Q
    ||||| |||||||||||||||  |||||||||||||||||||    
T  41170761 tgtttggattggcttatttgagtttatctactaacataaaca 41170720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 117
Target Start/End: Complemental strand, 2790389 - 2790357
Alignment:
Q  85 tgtttagattggcttatttgaacttatctacta 117  Q
    ||||| |||||||||||||||||||||||||||    
T  2790389 tgtttggattggcttatttgaacttatctacta 2790357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 123
Target Start/End: Original strand, 33068521 - 33068559
Alignment:
Q  85 tgtttagattggcttatttgaacttatctactaacataa 123  Q
    ||||| |||||||||||||||||||||||||| ||||||    
T  33068521 tgtttggattggcttatttgaacttatctactgacataa 33068559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 126
Target Start/End: Original strand, 159892 - 159933
Alignment:
Q  85 tgtttagattggcttatttgaacttatctactaacataaaca 126  Q
    ||||| ||||||||||||||| |||||||||||| |||||||    
T  159892 tgtttggattggcttatttgagcttatctactaatataaaca 159933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 126
Target Start/End: Original strand, 54277242 - 54277283
Alignment:
Q  85 tgtttagattggcttatttgaacttatctactaacataaaca 126  Q
    ||||||||||| |||||||||||||||||| | |||||||||    
T  54277242 tgtttagattgacttatttgaacttatctagtgacataaaca 54277283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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