View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11121_low_33 (Length: 364)

Name: NF11121_low_33
Description: NF11121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11121_low_33
NF11121_low_33
[»] chr7 (1 HSPs)
chr7 (1-364)||(449976-450337)
[»] chr3 (16 HSPs)
chr3 (78-313)||(9329809-9330041)
chr3 (78-236)||(9336513-9336671)
chr3 (160-300)||(9395314-9395454)
chr3 (106-221)||(41985629-41985744)
chr3 (159-222)||(9695615-9695678)
chr3 (106-221)||(9343846-9343961)
chr3 (146-221)||(41980895-41980970)
chr3 (175-223)||(9756450-9756498)
chr3 (182-221)||(9485969-9486008)
chr3 (182-221)||(13864281-13864320)
chr3 (76-129)||(16011774-16011827)
chr3 (75-129)||(9412978-9413032)
chr3 (175-221)||(9686753-9686799)
chr3 (164-229)||(16011695-16011760)
chr3 (174-222)||(9613916-9613964)
chr3 (1-29)||(16011838-16011866)
[»] chr6 (7 HSPs)
chr6 (146-229)||(7025797-7025880)
chr6 (146-222)||(7012861-7012937)
chr6 (106-230)||(7041497-7041621)
chr6 (146-229)||(7029854-7029937)
chr6 (146-221)||(7046880-7046955)
chr6 (146-230)||(9170858-9170942)
chr6 (146-230)||(9159486-9159570)
[»] chr5 (2 HSPs)
chr5 (157-224)||(18571163-18571230)
chr5 (106-230)||(33541653-33541777)
[»] chr8 (1 HSPs)
chr8 (164-221)||(13170684-13170741)


Alignment Details
Target: chr7 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 364
Target Start/End: Complemental strand, 450337 - 449976
Alignment:
Q  1 accttgatccaagtgaaaaacactcatattacggtccatgcaactaagaccgtgggaggcaaaataatctgtagtaaagatcacaccattcccatttgtt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  450337 accttgatccaagtgaaaaacactcatattacggtccatgcaactaagaccgcgggaggcaaaataatctgtagtaaagatcacaccattcccatttgtt 450238  T
Q  101 aaacccaaatccgaagcagaagcagaa------aaggaatacagatcgcctaagaacaaaattgtatctcctaaattcgtcaacttgacccactttttct 194  Q
    |||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  450237 aaacccaaatccgaagcagaagcagaagcagaaaaggaatacagatcgcctaagaacaaaattgtatctcctaaattcctcaacttgacccactttttct 450138  T
Q  195 ccttctcatcaagcctaaacacatcaatccatacagtaacacggtcaccgtttgtatagcaaatcactagcaacaactggaactcactactcgccaccaa 294  Q
    |||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  450137 ccttctcatcaagcctaaacacatcaatccatacagt--------caccgtttgtatagcaaatcactagcaacaactggaactcactactcgccaccaa 450046  T
Q  295 gaattttcttctcccaccataccacgggtcagcctgagccatcaaatgaatgctcatgtctggtccaatc 364  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  450045 gaattttcttctcccaccataccacgggtcagcctgagccatcaaatgaatgctcatgtctggtccaatc 449976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 78; Significance: 3e-36; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 78 - 313
Target Start/End: Original strand, 9329809 - 9330041
Alignment:
Q  78 agatcacaccattcccatttgttaaacccaaatccgaagcagaagcagaaaaggaatacagatcgcctaagaacaaaattgtatctcctaaattcgtcaa 177  Q
    |||| |||| ||||||||| |  |||||||| || ||||||||||||||||| |||||   ||  || ||||||||||   ||||||||||||||| |||    
T  9329809 agatgacacaattcccattggcaaaacccaactcggaagcagaagcagaaaacgaatatccattccccaagaacaaaaccttatctcctaaattcgccaa 9329908  T
Q  178 cttgacccactttttctccttctcatcaagcctaaacacatcaatccatacagtaacacggtcaccgtttgtatagcaaatcactagcaacaactggaac 277  Q
    |||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||| | |   |||  ||| | |  ||| ||||||||||  |||    
T  9329909 cttgacccaccttttctctttctcatcaagcctaaacacatcaatccatacaggaacacgataa---ttttcatatctatccaccagcaacaactcaaac 9330005  T
Q  278 tcactactcgccaccaagaattttcttctcccacca 313  Q
    ||||||||| | ||||||||||| ||| ||||||||    
T  9330006 tcactactctcgaccaagaatttacttttcccacca 9330041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 78 - 236
Target Start/End: Original strand, 9336513 - 9336671
Alignment:
Q  78 agatcacaccattcccatttgttaaacccaaatccgaagcagaagcagaaaaggaatacagatcgcctaagaacaaaattgtatctcctaaattcgtcaa 177  Q
    |||| |||| ||||||||| |  |||||||| || ||||||||||||||||| ||| |   ||  || ||||||||||   ||||||||||||||||||     
T  9336513 agatgacacaattcccattggcaaaacccaactcggaagcagaagcagaaaacgaacatccattccccaagaacaaaaccttatctcctaaattcgtcag 9336612  T
Q  178 cttgacccactttttctccttctcatcaagcctaaacacatcaatccatacagtaacac 236  Q
    |||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||    
T  9336613 cttgacccaccttttctctttctcatcaagcctaaacacatcaatccatacaggaacac 9336671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 160 - 300
Target Start/End: Original strand, 9395314 - 9395454
Alignment:
Q  160 atctcctaaattcgtcaacttgacccactttttctccttctcatcaagcctaaacacatcaatccatacagtaacacggtcaccgtttgtatagcaaatc 259  Q
    |||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||| ||| | ||| ||||   |  |    
T  9395314 atctcctaaattagtcaacttcacccactttttctgcttctcatcaagcctaaacacatcaatccttacaataacacgatcatcatttttatatatatcc 9395413  T
Q  260 actagcaacaactggaactcactactcgccaccaagaattt 300  Q
    |||||||||||||| || |||||| || | |||||||||||    
T  9395414 actagcaacaactgaaagtcactagtctcgaccaagaattt 9395454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 106 - 221
Target Start/End: Original strand, 41985629 - 41985744
Alignment:
Q  106 caaatccgaagcagaagcagaaaaggaatacagatcgcctaagaacaaaattgtatctcctaaattcgtcaacttgacccactttttctccttctcatca 205  Q
    |||||||||||||||||||||||| ||| |   ||  || |||||||||| | |||| |||||| ||| |||||||||||| || |||||||||||||||    
T  41985629 caaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatca 41985728  T
Q  206 agcctaaacacatcaa 221  Q
    || || ||||||||||    
T  41985729 agtctgaacacatcaa 41985744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 159 - 222
Target Start/End: Complemental strand, 9695678 - 9695615
Alignment:
Q  159 tatctcctaaattcgtcaacttgacccactttttctccttctcatcaagcctaaacacatcaat 222  Q
    |||| |||||||| ||||||||||||||||| |||||||||||||||||||| || ||||||||    
T  9695678 tatcccctaaattggtcaacttgacccacttcttctccttctcatcaagcctgaatacatcaat 9695615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 106 - 221
Target Start/End: Original strand, 9343846 - 9343961
Alignment:
Q  106 caaatccgaagcagaagcagaaaaggaatacagatcgcctaagaacaaaattgtatctcctaaattcgtcaacttgacccactttttctccttctcatca 205  Q
    |||||||||||||||||||||||| ||| |   ||  || ||||||||||   |||| |||||| | || ||||| |||||||| |||||| ||||||||    
T  9343846 caaatccgaagcagaagcagaaaacgaacattcattccccaagaacaaaacactatcccctaaagttgttaacttcacccacttcttctccatctcatca 9343945  T
Q  206 agcctaaacacatcaa 221  Q
    ||| ||||||||||||    
T  9343946 agcttaaacacatcaa 9343961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 146 - 221
Target Start/End: Original strand, 41980895 - 41980970
Alignment:
Q  146 aagaacaaaattgtatctcctaaattcgtcaacttgacccactttttctccttctcatcaagcctaaacacatcaa 221  Q
    |||||||||| | |||| |||||| |||||||||||||||| || ||||| |||| | ||||||||||||||||||    
T  41980895 aagaacaaaactctatcccctaaactcgtcaacttgacccatttcttctctttcttagcaagcctaaacacatcaa 41980970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 175 - 223
Target Start/End: Original strand, 9756450 - 9756498
Alignment:
Q  175 caacttgacccactttttctccttctcatcaagcctaaacacatcaatc 223  Q
    ||||||||||||| ||||||| ||||||||||||||| |||||||||||    
T  9756450 caacttgacccaccttttctctttctcatcaagcctatacacatcaatc 9756498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 182 - 221
Target Start/End: Complemental strand, 9486008 - 9485969
Alignment:
Q  182 acccactttttctccttctcatcaagcctaaacacatcaa 221  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  9486008 acccacttcttctccttctcatcaagcctaaacacatcaa 9485969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 182 - 221
Target Start/End: Original strand, 13864281 - 13864320
Alignment:
Q  182 acccactttttctccttctcatcaagcctaaacacatcaa 221  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  13864281 acccactttttctccctctcatcaagcctaaacacatcaa 13864320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 76 - 129
Target Start/End: Complemental strand, 16011827 - 16011774
Alignment:
Q  76 aaagatcacaccattcccatttgttaaacccaaatccgaagcagaagcagaaaa 129  Q
    |||||| |||| ||||||||| | || |||||||||||||||||||||||||||    
T  16011827 aaagattacacaattcccattcgctacacccaaatccgaagcagaagcagaaaa 16011774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 129
Target Start/End: Original strand, 9412978 - 9413032
Alignment:
Q  75 taaagatcacaccattcccatttgttaaacccaaatccgaagcagaagcagaaaa 129  Q
    |||| ||||||| |||||||||| | ||||||||||||||||| ||| |||||||    
T  9412978 taaatatcacacaattcccatttctcaaacccaaatccgaagcggaaacagaaaa 9413032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 221
Target Start/End: Original strand, 9686753 - 9686799
Alignment:
Q  175 caacttgacccactttttctccttctcatcaagcctaaacacatcaa 221  Q
    ||||||||||||||| ||||| |||||||||||||| || |||||||    
T  9686753 caacttgacccacttcttctcgttctcatcaagcctgaatacatcaa 9686799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 229
Target Start/End: Complemental strand, 16011760 - 16011695
Alignment:
Q  164 cctaaattcgtcaacttgacccactttttctccttctcatcaagcctaaacacatcaatccataca 229  Q
    |||||||| | ||| || ||||| || |||||||||||||| |||| |||||||||||||| ||||    
T  16011760 cctaaattaggcaatttaacccaattcttctccttctcatcgagcccaaacacatcaatccttaca 16011695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 222
Target Start/End: Complemental strand, 9613964 - 9613916
Alignment:
Q  174 tcaacttgacccactttttctccttctcatcaagcctaaacacatcaat 222  Q
    ||||||| |||||||| |||||||||||||||||| |||| | ||||||    
T  9613964 tcaacttcacccacttcttctccttctcatcaagcttaaaaaaatcaat 9613916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 16011866 - 16011838
Alignment:
Q  1 accttgatccaagtgaaaaacactcatat 29  Q
    |||||||||||||||||||||||||||||    
T  16011866 accttgatccaagtgaaaaacactcatat 16011838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 146 - 229
Target Start/End: Original strand, 7025797 - 7025880
Alignment:
Q  146 aagaacaaaattgtatctcctaaattcgtcaacttgacccactttttctccttctcatcaagcctaaacacatcaatccataca 229  Q
    ||||||||||   ||||||||||| |||||||||| |||||||| ||||||||||||| |||| |||||| |||||||| ||||    
T  7025797 aagaacaaaaccctatctcctaaactcgtcaacttcacccacttcttctccttctcattaagcttaaacaaatcaatccttaca 7025880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 146 - 222
Target Start/End: Original strand, 7012861 - 7012937
Alignment:
Q  146 aagaacaaaattgtatctcctaaattcgtcaacttgacccactttttctccttctcatcaagcctaaacacatcaat 222  Q
    |||||||||||  ||||||||||| | |||||||| |||||||| ||||||||||||| |||| |||||| ||||||    
T  7012861 aagaacaaaatcctatctcctaaacttgtcaacttcacccacttcttctccttctcattaagcttaaacaaatcaat 7012937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 106 - 230
Target Start/End: Original strand, 7041497 - 7041621
Alignment:
Q  106 caaatccgaagcagaagcagaaaaggaatacagatcgcctaagaacaaaattgtatctcctaaattcgtcaacttgacccactttttctccttctcatca 205  Q
    |||||||||||||||| |||| || ||| | |  || || ||||||||||   |||| |||||| | |||||||| |||||||| ||||||||||||| |    
T  7041497 caaatccgaagcagaaacagagaacgaacatacttctcccaagaacaaaaccctatcccctaaactagtcaacttcacccacttcttctccttctcatta 7041596  T
Q  206 agcctaaacacatcaatccatacag 230  Q
    ||  |||||| ||||||||||||||    
T  7041597 agtttaaacaaatcaatccatacag 7041621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 146 - 229
Target Start/End: Original strand, 7029854 - 7029937
Alignment:
Q  146 aagaacaaaattgtatctcctaaattcgtcaacttgacccactttttctccttctcatcaagcctaaacacatcaatccataca 229  Q
    ||||||||||   |||| || ||| |||||||||| |||||||| ||||||||||||| |||| |||||| |||||||| ||||    
T  7029854 aagaacaaaaccctatccccgaaactcgtcaacttcacccacttcttctccttctcattaagcttaaacaaatcaatccttaca 7029937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 146 - 221
Target Start/End: Original strand, 7046880 - 7046955
Alignment:
Q  146 aagaacaaaattgtatctcctaaattcgtcaacttgacccactttttctccttctcatcaagcctaaacacatcaa 221  Q
    |||||||||| | |||| |||||| |||| ||||| |||||||| ||||||||||||| |||| |||||| |||||    
T  7046880 aagaacaaaactttatcccctaaactcgttaacttcacccacttcttctccttctcattaagcttaaacaaatcaa 7046955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 230
Target Start/End: Original strand, 9170858 - 9170942
Alignment:
Q  146 aagaacaaaattgtatctcctaaattcgtcaacttgacccactttttctccttctcatcaagcctaaacacatcaatccatacag 230  Q
    ||||||||||   |||| |||||| |||| || || |||||||| ||||||||||||| |||| |||||| |||||||| |||||    
T  9170858 aagaacaaaaccctatcccctaaactcgttaatttcacccacttcttctccttctcattaagcttaaacaaatcaatccttacag 9170942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 146 - 230
Target Start/End: Complemental strand, 9159570 - 9159486
Alignment:
Q  146 aagaacaaaattgtatctcctaaattcgtcaacttgacccactttttctccttctcatcaagcctaaacacatcaatccatacag 230  Q
    ||||||||||   |||| |||||| |||| || || |||||||| ||||||||||| | |||| |||||| |||||||| |||||    
T  9159570 aagaacaaaaccctatcccctaaactcgttaatttcacccacttcttctccttctcgttaagcttaaacaaatcaatccttacag 9159486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 157 - 224
Target Start/End: Original strand, 18571163 - 18571230
Alignment:
Q  157 tgtatctcctaaattcgtcaacttgacccactttttctccttctcatcaagcctaaacacatcaatcc 224  Q
    |||||| |||||| ||||||| || |||||||| |||||||||||||||||| |||| | ||||||||    
T  18571163 tgtatcccctaaactcgtcaatttcacccacttcttctccttctcatcaagcttaaagaaatcaatcc 18571230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 230
Target Start/End: Original strand, 33541653 - 33541777
Alignment:
Q  106 caaatccgaagcagaagcagaaaaggaatacagatcgcctaagaacaaaattgtatctcctaaattcgtcaacttgacccactttttctccttctcatca 205  Q
    |||||| |||||||| |||||||||||| |   | | |||||||||||||   ||||||||||| || | ||||| |||||||   |||||||||||| |    
T  33541653 caaatcagaagcagatgcagaaaaggaacagtcagcccctaagaacaaaacaatatctcctaaactctttaacttcacccactccgtctccttctcatta 33541752  T
Q  206 agcctaaacacatcaatccatacag 230  Q
    ||| |||||| || ||||| |||||    
T  33541753 agcttaaacaaatgaatccttacag 33541777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 221
Target Start/End: Complemental strand, 13170741 - 13170684
Alignment:
Q  164 cctaaattcgtcaacttgacccactttttctccttctcatcaagcctaaacacatcaa 221  Q
    |||||| ||| |||||||||||| || |||||||| |||||||| || ||||||||||    
T  13170741 cctaaactcgccaacttgacccatttcttctccttttcatcaagtctgaacacatcaa 13170684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University